miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31022 3' -59 NC_006560.1 + 150387 0.66 0.818992
Target:  5'- gGCGCGUUugggGCgggUCCgGGCGGGCcc-UCCc -3'
miRNA:   3'- -CGCGCAG----CG---AGGgCUGCCCGucaAGG- -5'
31022 3' -59 NC_006560.1 + 150332 0.78 0.208628
Target:  5'- cCGCGcCGCguuUCCCGGCgGGGCGGUUCg -3'
miRNA:   3'- cGCGCaGCG---AGGGCUG-CCCGUCAAGg -5'
31022 3' -59 NC_006560.1 + 150125 0.68 0.690658
Target:  5'- cGCGCGccggcggccUCaGCUUCCGGCGGGCGcGcgCg -3'
miRNA:   3'- -CGCGC---------AG-CGAGGGCUGCCCGU-CaaGg -5'
31022 3' -59 NC_006560.1 + 148831 0.7 0.611843
Target:  5'- cGCcCGg-GCUucCCCGAUGGGCGGUcCCa -3'
miRNA:   3'- -CGcGCagCGA--GGGCUGCCCGUCAaGG- -5'
31022 3' -59 NC_006560.1 + 148627 0.68 0.729221
Target:  5'- gGCG-GUC---CCCGACGGGCGGgccCCg -3'
miRNA:   3'- -CGCgCAGcgaGGGCUGCCCGUCaa-GG- -5'
31022 3' -59 NC_006560.1 + 148493 0.77 0.246038
Target:  5'- aGCGCGgaggC-CUCCCGGCGGGaCGGcggUCCg -3'
miRNA:   3'- -CGCGCa---GcGAGGGCUGCCC-GUCa--AGG- -5'
31022 3' -59 NC_006560.1 + 148408 0.71 0.553104
Target:  5'- aCGCGgggCGCUCCgGGCGGGCcGg--- -3'
miRNA:   3'- cGCGCa--GCGAGGgCUGCCCGuCaagg -5'
31022 3' -59 NC_006560.1 + 145903 0.67 0.748066
Target:  5'- aCGgGUCGCcCUCGGCGGG-GG-UCCa -3'
miRNA:   3'- cGCgCAGCGaGGGCUGCCCgUCaAGG- -5'
31022 3' -59 NC_006560.1 + 144384 0.66 0.827225
Target:  5'- gGCgGCGUcCGCgggCCGGCGGGCcccccGGgccUCCg -3'
miRNA:   3'- -CG-CGCA-GCGag-GGCUGCCCG-----UCa--AGG- -5'
31022 3' -59 NC_006560.1 + 142067 0.69 0.66123
Target:  5'- cGCGCacccCGaggCCgGGCGGGCGGggCCg -3'
miRNA:   3'- -CGCGca--GCga-GGgCUGCCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 139606 0.68 0.719677
Target:  5'- gGCGCGagcgagCGCUCCCGGa-GGUacuGGUUCg -3'
miRNA:   3'- -CGCGCa-----GCGAGGGCUgcCCG---UCAAGg -5'
31022 3' -59 NC_006560.1 + 137403 0.67 0.766531
Target:  5'- aGCGCG-C-CUUCCu-CGGGCGGUaCCa -3'
miRNA:   3'- -CGCGCaGcGAGGGcuGCCCGUCAaGG- -5'
31022 3' -59 NC_006560.1 + 137186 0.67 0.781878
Target:  5'- gGCGCGgagggCGCggcCCCGccggcggccggggaGCGGGC-GUUCg -3'
miRNA:   3'- -CGCGCa----GCGa--GGGC--------------UGCCCGuCAAGg -5'
31022 3' -59 NC_006560.1 + 135987 0.66 0.835293
Target:  5'- cGCGCgGUgGCggCCGG-GGGCGGgaCCg -3'
miRNA:   3'- -CGCG-CAgCGagGGCUgCCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 135591 0.68 0.729221
Target:  5'- cGCGCGggUGC-CCCGGCcgcaGUGGUUCCg -3'
miRNA:   3'- -CGCGCa-GCGaGGGCUGcc--CGUCAAGG- -5'
31022 3' -59 NC_006560.1 + 135101 0.67 0.738687
Target:  5'- gGCGCaccaggCGCUCgggcucgagCCGGCGGGCGG--CCa -3'
miRNA:   3'- -CGCGca----GCGAG---------GGCUGCCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 134239 0.68 0.700387
Target:  5'- cGCGCGgcccgccccCGCggcccgCCCGAagcCGGGCAGggCg -3'
miRNA:   3'- -CGCGCa--------GCGa-----GGGCU---GCCCGUCaaGg -5'
31022 3' -59 NC_006560.1 + 132961 0.76 0.276044
Target:  5'- gGCG-GUCGCgugggCCCGG-GGGCAGUUCUc -3'
miRNA:   3'- -CGCgCAGCGa----GGGCUgCCCGUCAAGG- -5'
31022 3' -59 NC_006560.1 + 132100 0.66 0.835293
Target:  5'- uGCGCGUgUGCggcgggCCggaCGGCGGGuCGGUcgCCg -3'
miRNA:   3'- -CGCGCA-GCGa-----GG---GCUGCCC-GUCAa-GG- -5'
31022 3' -59 NC_006560.1 + 131972 0.68 0.709098
Target:  5'- cGCGCGgCGC-CUCGACgccgaguacuGGGCGGUcgcggagggcccgUCCg -3'
miRNA:   3'- -CGCGCaGCGaGGGCUG----------CCCGUCA-------------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.