miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31022 5' -52.1 NC_006560.1 + 125241 0.66 0.98079
Target:  5'- uAGcGGCGUC--GCGUCGGaCGuGCUGCUg -3'
miRNA:   3'- cUC-CUGCAGuuUGUAGUC-GU-CGACGA- -5'
31022 5' -52.1 NC_006560.1 + 75343 0.66 0.98079
Target:  5'- aAGGugGUCGgggcGACG-CGGCGGC-GCg -3'
miRNA:   3'- cUCCugCAGU----UUGUaGUCGUCGaCGa -5'
31022 5' -52.1 NC_006560.1 + 62753 0.66 0.980568
Target:  5'- gGGGGugGUCcgcggcgAGGCA-CGGCAGCgcccGCUc -3'
miRNA:   3'- -CUCCugCAG-------UUUGUaGUCGUCGa---CGA- -5'
31022 5' -52.1 NC_006560.1 + 39056 0.66 0.978488
Target:  5'- aGGGGugGUgCAucGCcgCGGC-GCUGCg -3'
miRNA:   3'- -CUCCugCA-GUu-UGuaGUCGuCGACGa -5'
31022 5' -52.1 NC_006560.1 + 99873 0.66 0.978488
Target:  5'- gGGGGGCG-CGGGgGUCguGGCGGCgGCg -3'
miRNA:   3'- -CUCCUGCaGUUUgUAG--UCGUCGaCGa -5'
31022 5' -52.1 NC_006560.1 + 135189 0.66 0.978488
Target:  5'- cAGGGCGcCGAAgA-CGGCGGcCUGCa -3'
miRNA:   3'- cUCCUGCaGUUUgUaGUCGUC-GACGa -5'
31022 5' -52.1 NC_006560.1 + 124254 0.66 0.978247
Target:  5'- -cGGACGUCGAGCcguggugGUCcGCGGUcGCg -3'
miRNA:   3'- cuCCUGCAGUUUG-------UAGuCGUCGaCGa -5'
31022 5' -52.1 NC_006560.1 + 42912 0.66 0.975987
Target:  5'- cGGGGACGagUCGAcggcGCcgCGGUAGCgcgGCg -3'
miRNA:   3'- -CUCCUGC--AGUU----UGuaGUCGUCGa--CGa -5'
31022 5' -52.1 NC_006560.1 + 99306 0.66 0.975987
Target:  5'- gGAGGugGUgGGGCG-CGGgGGCgUGCg -3'
miRNA:   3'- -CUCCugCAgUUUGUaGUCgUCG-ACGa -5'
31022 5' -52.1 NC_006560.1 + 9056 0.66 0.975987
Target:  5'- cGGGGGCGUCGAccGCcUCcagggggaggGGCGGCgggGCg -3'
miRNA:   3'- -CUCCUGCAGUU--UGuAG----------UCGUCGa--CGa -5'
31022 5' -52.1 NC_006560.1 + 120507 0.66 0.97328
Target:  5'- cGAGGugGUC--GCGg-GGCAGCgggGCg -3'
miRNA:   3'- -CUCCugCAGuuUGUagUCGUCGa--CGa -5'
31022 5' -52.1 NC_006560.1 + 41285 0.66 0.97328
Target:  5'- cAGGaACGUcCGGGCgGUCGcGCGGCUGCc -3'
miRNA:   3'- cUCC-UGCA-GUUUG-UAGU-CGUCGACGa -5'
31022 5' -52.1 NC_006560.1 + 141932 0.66 0.970359
Target:  5'- -cGGGCGUCAGGCGaaGGaacaccgAGCUGCa -3'
miRNA:   3'- cuCCUGCAGUUUGUagUCg------UCGACGa -5'
31022 5' -52.1 NC_006560.1 + 39959 0.66 0.970359
Target:  5'- cGGGGCGgc-GGCGcgGGCGGCUGCg -3'
miRNA:   3'- cUCCUGCaguUUGUagUCGUCGACGa -5'
31022 5' -52.1 NC_006560.1 + 140217 0.66 0.970359
Target:  5'- aGGGGGCGcCAcGCGUCgccgaccagaaAGCGGCgGCg -3'
miRNA:   3'- -CUCCUGCaGUuUGUAG-----------UCGUCGaCGa -5'
31022 5' -52.1 NC_006560.1 + 93024 0.66 0.970055
Target:  5'- cGAGGACGaCGAcgcgcccACGuUCGGCGGCUucGCg -3'
miRNA:   3'- -CUCCUGCaGUU-------UGU-AGUCGUCGA--CGa -5'
31022 5' -52.1 NC_006560.1 + 131658 0.66 0.96689
Target:  5'- gGAGGGCGUCGccggcgaggcccuGGCGggcgGGgGGCUGCUc -3'
miRNA:   3'- -CUCCUGCAGU-------------UUGUag--UCgUCGACGA- -5'
31022 5' -52.1 NC_006560.1 + 70033 0.67 0.960238
Target:  5'- aGAuGGCGgaGAACAUUgAGCAGCUGCUc -3'
miRNA:   3'- -CUcCUGCagUUUGUAG-UCGUCGACGA- -5'
31022 5' -52.1 NC_006560.1 + 127161 0.67 0.952297
Target:  5'- --cGGCGUCGAGC-UCGGCGGCguccUGCc -3'
miRNA:   3'- cucCUGCAGUUUGuAGUCGUCG----ACGa -5'
31022 5' -52.1 NC_006560.1 + 66958 0.67 0.952297
Target:  5'- uGGGcGCGUCGAGCccCAGCAGCcagaGCg -3'
miRNA:   3'- cUCC-UGCAGUUUGuaGUCGUCGa---CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.