miRNA display CGI


Results 1 - 20 of 339 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31025 5' -58.1 NC_006560.1 + 149743 0.66 0.826943
Target:  5'- gGCGGGaacgaccaccgaccCCCGGG-GcgCGGgggcGUCGAGGCg -3'
miRNA:   3'- -CGCCU--------------GGGCCCuCuaGCU----CGGCUUCG- -5'
31025 5' -58.1 NC_006560.1 + 149345 0.66 0.867955
Target:  5'- gGCGGcuccuccccGCCgCGGG-GAg-GAGCCGGgcGGCg -3'
miRNA:   3'- -CGCC---------UGG-GCCCuCUagCUCGGCU--UCG- -5'
31025 5' -58.1 NC_006560.1 + 149207 0.67 0.777634
Target:  5'- gGCGG-CgaGGGGGcgCGGcCCGggGCg -3'
miRNA:   3'- -CGCCuGggCCCUCuaGCUcGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 148495 0.66 0.853094
Target:  5'- cGCGGAggccuCCCGGcGGGAcggCGGuCCGAcGGCg -3'
miRNA:   3'- -CGCCU-----GGGCC-CUCUa--GCUcGGCU-UCG- -5'
31025 5' -58.1 NC_006560.1 + 148423 0.67 0.786616
Target:  5'- gGCGGGCCgGcgaggaGGAGAgagaacccgggCGGGCCGAcggucgucuggGGCg -3'
miRNA:   3'- -CGCCUGGgC------CCUCUa----------GCUCGGCU-----------UCG- -5'
31025 5' -58.1 NC_006560.1 + 148258 0.69 0.721445
Target:  5'- uGCGGACgCGGaGuAGcgCGGGgCCGcGAGCg -3'
miRNA:   3'- -CGCCUGgGCC-C-UCuaGCUC-GGC-UUCG- -5'
31025 5' -58.1 NC_006560.1 + 147939 0.79 0.212426
Target:  5'- cGCGGccCCCGGGAGG-CGGGCCcGGGCu -3'
miRNA:   3'- -CGCCu-GGGCCCUCUaGCUCGGcUUCG- -5'
31025 5' -58.1 NC_006560.1 + 147590 0.69 0.721445
Target:  5'- uGCGGcCCCcgaGGGuGA-CGgaGGCCGggGCc -3'
miRNA:   3'- -CGCCuGGG---CCCuCUaGC--UCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 147393 0.66 0.867955
Target:  5'- gGCGGAg--GGGAGcgCGGGCgGcAGCa -3'
miRNA:   3'- -CGCCUgggCCCUCuaGCUCGgCuUCG- -5'
31025 5' -58.1 NC_006560.1 + 147304 0.7 0.632817
Target:  5'- gGCGGGCgCCGGGcggaAGGUgGGGuCCGcuGCg -3'
miRNA:   3'- -CGCCUG-GGCCC----UCUAgCUC-GGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 147123 0.68 0.768528
Target:  5'- cGCGGGCCgCGGcgcGAGGcgcgCGcGCCGcGGCg -3'
miRNA:   3'- -CGCCUGG-GCC---CUCUa---GCuCGGCuUCG- -5'
31025 5' -58.1 NC_006560.1 + 147023 0.67 0.804179
Target:  5'- -gGGGCCaCGGGGGGcccCGAgacgGCCGggGg -3'
miRNA:   3'- cgCCUGG-GCCCUCUa--GCU----CGGCuuCg -5'
31025 5' -58.1 NC_006560.1 + 146971 0.7 0.642769
Target:  5'- cCGGGCCUGGGcGggUGGG-CGggGCa -3'
miRNA:   3'- cGCCUGGGCCCuCuaGCUCgGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 146941 0.68 0.731041
Target:  5'- cUGGGCCUGGGccugcGUCaGGGCCGggGg -3'
miRNA:   3'- cGCCUGGGCCCuc---UAG-CUCGGCuuCg -5'
31025 5' -58.1 NC_006560.1 + 146911 0.66 0.829399
Target:  5'- cUGGGCCCGGGcuuGAcucCGGGCCu--GCg -3'
miRNA:   3'- cGCCUGGGCCCu--CUa--GCUCGGcuuCG- -5'
31025 5' -58.1 NC_006560.1 + 146812 0.67 0.777634
Target:  5'- cUGGGCCCGGGgcgGGGUCuGGGUguGGGCg -3'
miRNA:   3'- cGCCUGGGCCC---UCUAG-CUCGgcUUCG- -5'
31025 5' -58.1 NC_006560.1 + 146758 0.68 0.759307
Target:  5'- cUGGGCCCGGGucuGGgcccgcgccUGAGUCGggGUc -3'
miRNA:   3'- cGCCUGGGCCCu--CUa--------GCUCGGCuuCG- -5'
31025 5' -58.1 NC_006560.1 + 146728 0.71 0.573337
Target:  5'- cUGGGCCUGGGucuGGGUCuGAGCCuGAGUc -3'
miRNA:   3'- cGCCUGGGCCC---UCUAG-CUCGGcUUCG- -5'
31025 5' -58.1 NC_006560.1 + 146681 0.67 0.795467
Target:  5'- cCGGGCCUGGGucuGGGUCuGAGUCu-GGCc -3'
miRNA:   3'- cGCCUGGGCCC---UCUAG-CUCGGcuUCG- -5'
31025 5' -58.1 NC_006560.1 + 146614 0.74 0.441002
Target:  5'- uGCGGGCCUGGGucuGGGUCugcgucuGAGCCcGGGCc -3'
miRNA:   3'- -CGCCUGGGCCC---UCUAG-------CUCGGcUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.