miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 15279 0.72 0.256053
Target:  5'- gCGGUCGCGGGagcCGGCgCGgCGGCgguggcCUCGg -3'
miRNA:   3'- -GCCAGCGCCC---GCUG-GCgGCCGa-----GAGC- -5'
31026 3' -64.2 NC_006560.1 + 55372 0.72 0.256053
Target:  5'- aCGGUCGCGGGguagcCGACgaGCCGGCagguguaCUCGc -3'
miRNA:   3'- -GCCAGCGCCC-----GCUGg-CGGCCGa------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 90347 0.72 0.256053
Target:  5'- cCGucgCGCGGGCGGCCGCCcaccuGGCgUUCGa -3'
miRNA:   3'- -GCca-GCGCCCGCUGGCGG-----CCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 142467 0.72 0.261244
Target:  5'- aGGU-GCGgcGGCGGCCGCCGGCguuuugcUUUCGg -3'
miRNA:   3'- gCCAgCGC--CCGCUGGCGGCCG-------AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 101729 0.72 0.273691
Target:  5'- uCGG-CGUGGGCccGGCCGCCGGggUUCa -3'
miRNA:   3'- -GCCaGCGCCCG--CUGGCGGCCgaGAGc -5'
31026 3' -64.2 NC_006560.1 + 141548 0.72 0.279783
Target:  5'- cCGGUcCGCGGGaGAaCGCCGGCgggcccggCUCGa -3'
miRNA:   3'- -GCCA-GCGCCCgCUgGCGGCCGa-------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 5508 0.72 0.285983
Target:  5'- gCGGUCGCGgcgagggucGGCGGCgGUCGcGCUCUUc -3'
miRNA:   3'- -GCCAGCGC---------CCGCUGgCGGC-CGAGAGc -5'
31026 3' -64.2 NC_006560.1 + 43850 0.72 0.285983
Target:  5'- gGGU-GCGGGCGACgugCGCCGGCgccagCGg -3'
miRNA:   3'- gCCAgCGCCCGCUG---GCGGCCGaga--GC- -5'
31026 3' -64.2 NC_006560.1 + 128736 0.71 0.29229
Target:  5'- -cGUCGUGGcgcccGCGGCCGCUGGCccgcccaguUCUCGg -3'
miRNA:   3'- gcCAGCGCC-----CGCUGGCGGCCG---------AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 20182 0.71 0.29229
Target:  5'- uCGGcUGgGGGCGACCgGCCcggGGCUCgUCGg -3'
miRNA:   3'- -GCCaGCgCCCGCUGG-CGG---CCGAG-AGC- -5'
31026 3' -64.2 NC_006560.1 + 3471 0.71 0.29229
Target:  5'- gCGGgccgCGCGGGCGG-CGUCGGCg-UCGg -3'
miRNA:   3'- -GCCa---GCGCCCGCUgGCGGCCGagAGC- -5'
31026 3' -64.2 NC_006560.1 + 118058 0.71 0.298706
Target:  5'- cCGGcgccgcCGCGGGCGcccCCGCCGaGCUCgCGg -3'
miRNA:   3'- -GCCa-----GCGCCCGCu--GGCGGC-CGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 1862 0.71 0.298706
Target:  5'- gGGUCGCGGGCGGgggUCGCgGGCg---- -3'
miRNA:   3'- gCCAGCGCCCGCU---GGCGgCCGagagc -5'
31026 3' -64.2 NC_006560.1 + 100485 0.71 0.30523
Target:  5'- gCGGgacaGCGGGgGGCCG-CGGCgCUCGa -3'
miRNA:   3'- -GCCag--CGCCCgCUGGCgGCCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 57398 0.71 0.30523
Target:  5'- gGGcCGCGGccagcGCGGCCGCCccGGCgacCUCGg -3'
miRNA:   3'- gCCaGCGCC-----CGCUGGCGG--CCGa--GAGC- -5'
31026 3' -64.2 NC_006560.1 + 108487 0.71 0.311862
Target:  5'- aGGUCGuCGGGCGugGCCGCCGGg----- -3'
miRNA:   3'- gCCAGC-GCCCGC--UGGCGGCCgagagc -5'
31026 3' -64.2 NC_006560.1 + 5639 0.71 0.318604
Target:  5'- cCGG-CGaCGGGCGGCgcccgGCCGGCUC-CGc -3'
miRNA:   3'- -GCCaGC-GCCCGCUGg----CGGCCGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 133358 0.71 0.318604
Target:  5'- aGGUCGCGGucccccGCGACCGCCuGC-CUa- -3'
miRNA:   3'- gCCAGCGCC------CGCUGGCGGcCGaGAgc -5'
31026 3' -64.2 NC_006560.1 + 62374 0.71 0.325455
Target:  5'- gGGUCGCGGG-GGgUGgCGGCUC-CGg -3'
miRNA:   3'- gCCAGCGCCCgCUgGCgGCCGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 33638 0.71 0.325455
Target:  5'- gCGGggggCGCcggGGGCGGCCGCgGGCcgCUUa -3'
miRNA:   3'- -GCCa---GCG---CCCGCUGGCGgCCGa-GAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.