miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31026 3' -64.2 NC_006560.1 + 149846 0.66 0.566921
Target:  5'- cCGGcCGCGGGCGggagACCcCCGGCa---- -3'
miRNA:   3'- -GCCaGCGCCCGC----UGGcGGCCGagagc -5'
31026 3' -64.2 NC_006560.1 + 148969 0.66 0.595346
Target:  5'- gCGGUgGCGcgaccaaccGGCGG-CGCCGGCaUCaUCGa -3'
miRNA:   3'- -GCCAgCGC---------CCGCUgGCGGCCG-AG-AGC- -5'
31026 3' -64.2 NC_006560.1 + 148628 0.67 0.520409
Target:  5'- gCGGUCcccgaCGGGCGGgccCCGCCGGC-Cg-- -3'
miRNA:   3'- -GCCAGc----GCCCGCU---GGCGGCCGaGagc -5'
31026 3' -64.2 NC_006560.1 + 147063 0.67 0.511279
Target:  5'- gGGagGCGGGCGGCgaGUCGGCgaUCa -3'
miRNA:   3'- gCCagCGCCCGCUGg-CGGCCGagAGc -5'
31026 3' -64.2 NC_006560.1 + 142545 0.7 0.361335
Target:  5'- cCGG-CGgcCGGGCGcgucggacgcggGCCGCCGGcCUCUCc -3'
miRNA:   3'- -GCCaGC--GCCCGC------------UGGCGGCC-GAGAGc -5'
31026 3' -64.2 NC_006560.1 + 142467 0.72 0.261244
Target:  5'- aGGU-GCGgcGGCGGCCGCCGGCguuuugcUUUCGg -3'
miRNA:   3'- gCCAgCGC--CCGCUGGCGGCCG-------AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 142441 0.66 0.576363
Target:  5'- cCGG-CGCGG-CGGCCGCgCGGCcC-CGc -3'
miRNA:   3'- -GCCaGCGCCcGCUGGCG-GCCGaGaGC- -5'
31026 3' -64.2 NC_006560.1 + 141548 0.72 0.279783
Target:  5'- cCGGUcCGCGGGaGAaCGCCGGCgggcccggCUCGa -3'
miRNA:   3'- -GCCA-GCGCCCgCUgGCGGCCGa-------GAGC- -5'
31026 3' -64.2 NC_006560.1 + 139158 0.66 0.575418
Target:  5'- aGGUCcuuGCGGaucguguccgugaGCuGCCGCCGGCccagCUCGu -3'
miRNA:   3'- gCCAG---CGCC-------------CGcUGGCGGCCGa---GAGC- -5'
31026 3' -64.2 NC_006560.1 + 137244 0.69 0.384148
Target:  5'- uGGgggCGCGGGCGGCgggcgaCGCCGaGUUCcCGg -3'
miRNA:   3'- gCCa--GCGCCCGCUG------GCGGC-CGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 135078 0.68 0.464096
Target:  5'- gGcGUCGgGGGCG-CCGCCguaccggcgcaccaGGCgCUCGg -3'
miRNA:   3'- gC-CAGCgCCCGCuGGCGG--------------CCGaGAGC- -5'
31026 3' -64.2 NC_006560.1 + 134456 0.7 0.361335
Target:  5'- aCGG-CGCGGGCGGCCcccGCgGGCcCgCGg -3'
miRNA:   3'- -GCCaGCGCCCGCUGG---CGgCCGaGaGC- -5'
31026 3' -64.2 NC_006560.1 + 133961 0.68 0.449445
Target:  5'- gGGUCGuCGGG-GGCCGCggcgccccccccCGGCUCgCGc -3'
miRNA:   3'- gCCAGC-GCCCgCUGGCG------------GCCGAGaGC- -5'
31026 3' -64.2 NC_006560.1 + 133530 0.67 0.502216
Target:  5'- gCGGcuUCGUGGGCGgggaGCCGgCGGCgcgCGg -3'
miRNA:   3'- -GCC--AGCGCCCGC----UGGCgGCCGagaGC- -5'
31026 3' -64.2 NC_006560.1 + 133358 0.71 0.318604
Target:  5'- aGGUCGCGGucccccGCGACCGCCuGC-CUa- -3'
miRNA:   3'- gCCAGCGCC------CGCUGGCGGcCGaGAgc -5'
31026 3' -64.2 NC_006560.1 + 131883 0.69 0.391962
Target:  5'- gCGGUCGCGGcguacGCGGagggCGCCGGCg--CGg -3'
miRNA:   3'- -GCCAGCGCC-----CGCUg---GCGGCCGagaGC- -5'
31026 3' -64.2 NC_006560.1 + 131060 0.7 0.376439
Target:  5'- aGGUCccgGCGGGCGccGCCGCCGuGCcCgccgCGg -3'
miRNA:   3'- gCCAG---CGCCCGC--UGGCGGC-CGaGa---GC- -5'
31026 3' -64.2 NC_006560.1 + 130506 0.66 0.576363
Target:  5'- aGGcCGCGcccGGCGGCCGgCCGGUgg-CGc -3'
miRNA:   3'- gCCaGCGC---CCGCUGGC-GGCCGagaGC- -5'
31026 3' -64.2 NC_006560.1 + 128736 0.71 0.29229
Target:  5'- -cGUCGUGGcgcccGCGGCCGCUGGCccgcccaguUCUCGg -3'
miRNA:   3'- gcCAGCGCC-----CGCUGGCGGCCG---------AGAGC- -5'
31026 3' -64.2 NC_006560.1 + 127155 0.67 0.49951
Target:  5'- gGGUCGCGgcgucgagcucggcGGCGucCUGCCGGCgg-CGg -3'
miRNA:   3'- gCCAGCGC--------------CCGCu-GGCGGCCGagaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.