miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31027 3' -56.1 NC_006560.1 + 24532 0.72 0.621229
Target:  5'- uGCGggccCGACAcGGCCGCCUggGC-CGGCa -3'
miRNA:   3'- -UGCa---GUUGUuCUGGCGGGa-CGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 11298 0.72 0.625317
Target:  5'- gGCG-CGcCAGGGCCGCCUcguucacggccgagaUGCUCGGg -3'
miRNA:   3'- -UGCaGUuGUUCUGGCGGG---------------ACGAGCCg -5'
31027 3' -56.1 NC_006560.1 + 32648 0.71 0.651882
Target:  5'- -aGggGAgGAGGCCGCCCgGCggCGGCa -3'
miRNA:   3'- ugCagUUgUUCUGGCGGGaCGa-GCCG- -5'
31027 3' -56.1 NC_006560.1 + 23075 0.71 0.651882
Target:  5'- gACGUgGAgCugGACCGCgCCUGCUUcgaGGCc -3'
miRNA:   3'- -UGCAgUU-GuuCUGGCG-GGACGAG---CCG- -5'
31027 3' -56.1 NC_006560.1 + 48450 0.71 0.651882
Target:  5'- cGCGUCGGgaGGGGCUGCCCgcguacUGCgCGGCc -3'
miRNA:   3'- -UGCAGUUg-UUCUGGCGGG------ACGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 38950 0.71 0.651882
Target:  5'- aGCGUCucccAgGAGACCcgGCgCUGCUCGGg -3'
miRNA:   3'- -UGCAGu---UgUUCUGG--CGgGACGAGCCg -5'
31027 3' -56.1 NC_006560.1 + 127162 0.71 0.66208
Target:  5'- gGCGUCgAGCucGGCggCGUCCUGC-CGGCg -3'
miRNA:   3'- -UGCAG-UUGuuCUG--GCGGGACGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 50313 0.7 0.692493
Target:  5'- cGCGUCGGagauccuGGCCGCCCUcGCg-GGCu -3'
miRNA:   3'- -UGCAGUUguu----CUGGCGGGA-CGagCCG- -5'
31027 3' -56.1 NC_006560.1 + 120440 0.7 0.692493
Target:  5'- cGCGcCccguCGAGGCCGUggugCUGCUCGGCu -3'
miRNA:   3'- -UGCaGuu--GUUCUGGCGg---GACGAGCCG- -5'
31027 3' -56.1 NC_006560.1 + 2271 0.7 0.702542
Target:  5'- cGCGgu-GCGAGugCGCCUcGCcgCGGCg -3'
miRNA:   3'- -UGCaguUGUUCugGCGGGaCGa-GCCG- -5'
31027 3' -56.1 NC_006560.1 + 53464 0.7 0.702542
Target:  5'- cUGUCGGC---GCCGCCCgagGCcgCGGCg -3'
miRNA:   3'- uGCAGUUGuucUGGCGGGa--CGa-GCCG- -5'
31027 3' -56.1 NC_006560.1 + 144132 0.7 0.712531
Target:  5'- gGCGgccgCGGCGGcGCCcCCCcgGCUCGGCa -3'
miRNA:   3'- -UGCa---GUUGUUcUGGcGGGa-CGAGCCG- -5'
31027 3' -56.1 NC_006560.1 + 18245 0.7 0.721464
Target:  5'- gACGUCGGCGgacgccAGcCCGCuccuguggaacuuCCUGCUgCGGCa -3'
miRNA:   3'- -UGCAGUUGU------UCuGGCG-------------GGACGA-GCCG- -5'
31027 3' -56.1 NC_006560.1 + 39324 0.7 0.722453
Target:  5'- gGCGguggGGCGGGGCCGCCCgccCUCGcGCc -3'
miRNA:   3'- -UGCag--UUGUUCUGGCGGGac-GAGC-CG- -5'
31027 3' -56.1 NC_006560.1 + 57402 0.7 0.732297
Target:  5'- cGCGgcCAGCGcGGCCGCCCcgGCgaccucggggCGGCa -3'
miRNA:   3'- -UGCa-GUUGUuCUGGCGGGa-CGa---------GCCG- -5'
31027 3' -56.1 NC_006560.1 + 127479 0.7 0.732297
Target:  5'- cGCGcgaGACGGGcucGCCGCCCgcggGCgCGGCg -3'
miRNA:   3'- -UGCag-UUGUUC---UGGCGGGa---CGaGCCG- -5'
31027 3' -56.1 NC_006560.1 + 110426 0.69 0.742055
Target:  5'- gACGgccuGCGGGgccgccGCCGCCCUGUggguggCGGCg -3'
miRNA:   3'- -UGCagu-UGUUC------UGGCGGGACGa-----GCCG- -5'
31027 3' -56.1 NC_006560.1 + 11776 0.69 0.742055
Target:  5'- cGCGUCGACcGGcgucucGCCGCCggggggggGCUCGGUc -3'
miRNA:   3'- -UGCAGUUGuUC------UGGCGGga------CGAGCCG- -5'
31027 3' -56.1 NC_006560.1 + 2308 0.69 0.742055
Target:  5'- cGCGcCGGCGGcGGCCGCCUcGCgcgcgggcgagUCGGCg -3'
miRNA:   3'- -UGCaGUUGUU-CUGGCGGGaCG-----------AGCCG- -5'
31027 3' -56.1 NC_006560.1 + 117640 0.69 0.742055
Target:  5'- cGCGacCGGCGAGugCGgcCCCUGgguCUCGGCg -3'
miRNA:   3'- -UGCa-GUUGUUCugGC--GGGAC---GAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.