Results 1 - 20 of 417 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31027 | 5' | -67.4 | NC_006560.1 | + | 105420 | 1.07 | 0.000363 |
Target: 5'- gACGCCAGGCUGCCCCCGGCCGCACCGa -3' miRNA: 3'- -UGCGGUCCGACGGGGGCCGGCGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 108606 | 0.66 | 0.420189 |
Target: 5'- gGCGCCGcGCgcGCCcgcgagcgaCCCggcgaugGGCCGCGCCGa -3' miRNA: 3'- -UGCGGUcCGa-CGG---------GGG-------CCGGCGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 127472 | 0.66 | 0.412848 |
Target: 5'- cACGCCgcgcgcgagacGGGCUcgccGCCCgCGGgCGCGgCGg -3' miRNA: 3'- -UGCGG-----------UCCGA----CGGGgGCCgGCGUgGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 96941 | 0.66 | 0.412848 |
Target: 5'- aGCGCgaccucucgaCGGGCcGCCgCgCC-GCCGCGCCGg -3' miRNA: 3'- -UGCG----------GUCCGaCGG-G-GGcCGGCGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 85857 | 0.66 | 0.412848 |
Target: 5'- cGCGCCcgaAGGCgucgaGCCCcgCCGGCaggggguGCGCCa -3' miRNA: 3'- -UGCGG---UCCGa----CGGG--GGCCGg------CGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 148407 | 0.66 | 0.412848 |
Target: 5'- gACGCgGGGC-GCUCCgGGC-GgGCCGg -3' miRNA: 3'- -UGCGgUCCGaCGGGGgCCGgCgUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 107885 | 0.66 | 0.412848 |
Target: 5'- cCGUCAGGCggGCgaCCCggguGGCCGCGgCCa -3' miRNA: 3'- uGCGGUCCGa-CGg-GGG----CCGGCGU-GGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 95097 | 0.66 | 0.412848 |
Target: 5'- -gGCCGGGCcGCCgCCGacguccGCgaGCGCCGg -3' miRNA: 3'- ugCGGUCCGaCGGgGGC------CGg-CGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 63841 | 0.66 | 0.412848 |
Target: 5'- aGCGCCGGGCcuccucGCCCgCCaGCaCGC-CCu -3' miRNA: 3'- -UGCGGUCCGa-----CGGG-GGcCG-GCGuGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 118868 | 0.66 | 0.420189 |
Target: 5'- gGCGCgCGugcagacGGCgugccuccggGCCCUgGGCUGCGCCa -3' miRNA: 3'- -UGCG-GU-------CCGa---------CGGGGgCCGGCGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 1355 | 0.66 | 0.421009 |
Target: 5'- uGCGCgCGGGUc-CCCCgCGGCCcGCACgGc -3' miRNA: 3'- -UGCG-GUCCGacGGGG-GCCGG-CGUGgC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 19910 | 0.66 | 0.421009 |
Target: 5'- gACGCCgcAGGCggucaGCCgCgCCGcguggguugauGCCGCGCCGc -3' miRNA: 3'- -UGCGG--UCCGa----CGG-G-GGC-----------CGGCGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 112336 | 0.66 | 0.421009 |
Target: 5'- aACGCCcacCUGCCCuUCGaGCUGCACCc -3' miRNA: 3'- -UGCGGuccGACGGG-GGC-CGGCGUGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 99331 | 0.66 | 0.421009 |
Target: 5'- cGCGCCGacGGCcgccGCCUCCcaCUGCGCCGg -3' miRNA: 3'- -UGCGGU--CCGa---CGGGGGccGGCGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 48116 | 0.66 | 0.421009 |
Target: 5'- gACGCCGcGacgGCCCCgaGGCCGUacGCCa -3' miRNA: 3'- -UGCGGUcCga-CGGGGg-CCGGCG--UGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 40311 | 0.66 | 0.421009 |
Target: 5'- cGCGCUugggcGGGCgcgGCCCCUucuccggcccgGGCgGgGCCGa -3' miRNA: 3'- -UGCGG-----UCCGa--CGGGGG-----------CCGgCgUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 25242 | 0.66 | 0.421009 |
Target: 5'- cGCGCCcuGCccgaGCcggaCCCCGacGCCGCGCCGc -3' miRNA: 3'- -UGCGGucCGa---CG----GGGGC--CGGCGUGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 130790 | 0.66 | 0.421009 |
Target: 5'- uGCGCgAGGCgGUgCUgCGGCCGCgggGCCa -3' miRNA: 3'- -UGCGgUCCGaCGgGG-GCCGGCG---UGGc -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 88982 | 0.66 | 0.421009 |
Target: 5'- -gGCC-GGCU-CCCCCGG-CGC-CCGu -3' miRNA: 3'- ugCGGuCCGAcGGGGGCCgGCGuGGC- -5' |
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31027 | 5' | -67.4 | NC_006560.1 | + | 38714 | 0.66 | 0.421009 |
Target: 5'- -aGCCGGGUgcucagGUucucgaggacggCCCCGGCCGUGgCGa -3' miRNA: 3'- ugCGGUCCGa-----CG------------GGGGCCGGCGUgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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