miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 39956 0.74 0.168785
Target:  5'- aGGCGGGgCGGC-GGCGCgGGC-GGCu -3'
miRNA:   3'- -CCGCCCgGCUGaCCGUGgCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 73340 0.74 0.171619
Target:  5'- gGGCGucGGCCGcCUGGCGCUGGCcaagcugguucucgUGGCc -3'
miRNA:   3'- -CCGC--CCGGCuGACCGUGGCCG--------------ACCGc -5'
31028 5' -64.9 NC_006560.1 + 130516 0.74 0.176996
Target:  5'- cGGC-GGCCGGCcggUGGCGCCGcGC-GGCGc -3'
miRNA:   3'- -CCGcCCGGCUG---ACCGUGGC-CGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 20929 0.74 0.181234
Target:  5'- aGGaGGGCCGGC-GGCGgCGGCgacGGCGu -3'
miRNA:   3'- -CCgCCCGGCUGaCCGUgGCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 131043 0.74 0.181234
Target:  5'- cGGCuGGCCGACgcugaaGGUcCCGGCgGGCGc -3'
miRNA:   3'- -CCGcCCGGCUGa-----CCGuGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 75961 0.73 0.185561
Target:  5'- uGGCcgcgcugaGGGCCGACguccaccgGGCGCUGGggGGCGu -3'
miRNA:   3'- -CCG--------CCCGGCUGa-------CCGUGGCCgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 75135 0.73 0.185561
Target:  5'- cGCGGccGCCGAcCUGGCGgCGGCggugcGGCGg -3'
miRNA:   3'- cCGCC--CGGCU-GACCGUgGCCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 118050 0.73 0.188644
Target:  5'- gGGCGGGcCCGGCgccgccgcgGGCGCCcccgccgagcucgcGGCgGGCGa -3'
miRNA:   3'- -CCGCCC-GGCUGa--------CCGUGG--------------CCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 52230 0.73 0.199093
Target:  5'- uGGCGaGCUGcCUGGCcCCGGCcGGCGc -3'
miRNA:   3'- -CCGCcCGGCuGACCGuGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 4012 0.73 0.199093
Target:  5'- cGGCGaGGCCGGg-GGCGgCGGC-GGCGu -3'
miRNA:   3'- -CCGC-CCGGCUgaCCGUgGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 3221 0.73 0.199093
Target:  5'- gGGCGGcGgCGGCgGGCGgCGGCgugugGGCGg -3'
miRNA:   3'- -CCGCC-CgGCUGaCCGUgGCCGa----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 72360 0.73 0.203791
Target:  5'- gGGCGcGGCCcucGCgggGGCGCCG-CUGGCGc -3'
miRNA:   3'- -CCGC-CCGGc--UGa--CCGUGGCcGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 51980 0.73 0.203791
Target:  5'- cGGCGGG-CGGCgGGCcuGCCGGCgcGGUGa -3'
miRNA:   3'- -CCGCCCgGCUGaCCG--UGGCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 140021 0.73 0.203791
Target:  5'- cGCGaGGCCGugggcCUGGC-CgGGCUGGUGa -3'
miRNA:   3'- cCGC-CCGGCu----GACCGuGgCCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 141567 0.73 0.212983
Target:  5'- cGGCGGGcCCGGCUcgaccccGGCGgCGGC-GGCc -3'
miRNA:   3'- -CCGCCC-GGCUGA-------CCGUgGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 146979 0.73 0.213476
Target:  5'- gGGCGGGUgGGCggGGCAUggCGGCUcGCGg -3'
miRNA:   3'- -CCGCCCGgCUGa-CCGUG--GCCGAcCGC- -5'
31028 5' -64.9 NC_006560.1 + 119113 0.72 0.218466
Target:  5'- aGCGGGCCuuccGCgGGCGCCGGUUcgugccgccgGGCGa -3'
miRNA:   3'- cCGCCCGGc---UGaCCGUGGCCGA----------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 84430 0.72 0.223041
Target:  5'- cGCGGGCCGGCgcuccgcccacGGCcgcccgucccuccGCCGGCUGGa- -3'
miRNA:   3'- cCGCCCGGCUGa----------CCG-------------UGGCCGACCgc -5'
31028 5' -64.9 NC_006560.1 + 21726 0.72 0.223554
Target:  5'- gGGCGGaGCCGGCcgGGCGCCGcccgucGCcGGCc -3'
miRNA:   3'- -CCGCC-CGGCUGa-CCGUGGC------CGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 148452 0.72 0.234034
Target:  5'- gGGCGGGCCGACggucgucuggGGCGgCGGa--GCGg -3'
miRNA:   3'- -CCGCCCGGCUGa---------CCGUgGCCgacCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.