miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 150125 0.66 0.522618
Target:  5'- cGCGcGCCGGC-GGCcucagcuuCCGGCgGGCGc -3'
miRNA:   3'- cCGCcCGGCUGaCCGu-------GGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 149490 0.67 0.484444
Target:  5'- cGGCccGGGCCGACgcuccccgcccgGGcCGCCGGCccgGGa- -3'
miRNA:   3'- -CCG--CCCGGCUGa-----------CC-GUGGCCGa--CCgc -5'
31028 5' -64.9 NC_006560.1 + 149327 0.71 0.286364
Target:  5'- cGGCGGGCCGGagacGGCGgCGGCUccuccccgccgcGGgGa -3'
miRNA:   3'- -CCGCCCGGCUga--CCGUgGCCGA------------CCgC- -5'
31028 5' -64.9 NC_006560.1 + 148960 0.66 0.5125
Target:  5'- gGGCGGGaCGcGgUGGCgcgaccaACCGGC-GGCGc -3'
miRNA:   3'- -CCGCCCgGC-UgACCG-------UGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 148757 0.71 0.26796
Target:  5'- gGGCGGccCCGACgGGCGCCauguuggagggGGCgGGCGg -3'
miRNA:   3'- -CCGCCc-GGCUGaCCGUGG-----------CCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 148640 0.67 0.460621
Target:  5'- gGGCGGGCCccgccggccggaGACgcggcccaaauacggGGCGCCGug-GGCGg -3'
miRNA:   3'- -CCGCCCGG------------CUGa--------------CCGUGGCcgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 148516 0.75 0.157107
Target:  5'- cGGCGGuCCGAC-GGCgACUGGCUGGgGu -3'
miRNA:   3'- -CCGCCcGGCUGaCCG-UGGCCGACCgC- -5'
31028 5' -64.9 NC_006560.1 + 148452 0.72 0.234034
Target:  5'- gGGCGGGCCGACggucgucuggGGCGgCGGa--GCGg -3'
miRNA:   3'- -CCGCCCGGCUGa---------CCGUgGCCgacCGC- -5'
31028 5' -64.9 NC_006560.1 + 147952 0.67 0.434054
Target:  5'- aGGCGGGCCcgGGCUcgcagagcucGGCGuCCGuGUcGGCGu -3'
miRNA:   3'- -CCGCCCGG--CUGA----------CCGU-GGC-CGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 147659 0.67 0.477323
Target:  5'- cGGCGGuGCCGGC-GcGCACCgccuccucGGCcucGGCGc -3'
miRNA:   3'- -CCGCC-CGGCUGaC-CGUGG--------CCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 147279 0.7 0.31243
Target:  5'- cGGCcgGGGCCgGGCggggGGCuCUGGCgGGCGc -3'
miRNA:   3'- -CCG--CCCGG-CUGa---CCGuGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 147109 0.7 0.326124
Target:  5'- gGGCGGGCgcgCGACgcgGGC-CgCGGCgcgaGGCGc -3'
miRNA:   3'- -CCGCCCG---GCUGa--CCGuG-GCCGa---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 146979 0.73 0.213476
Target:  5'- gGGCGGGUgGGCggGGCAUggCGGCUcGCGg -3'
miRNA:   3'- -CCGCCCGgCUGa-CCGUG--GCCGAcCGC- -5'
31028 5' -64.9 NC_006560.1 + 146523 0.76 0.120307
Target:  5'- gGGCGGGCCGGCgcgucggggGGCGCgGGCa-GCGa -3'
miRNA:   3'- -CCGCCCGGCUGa--------CCGUGgCCGacCGC- -5'
31028 5' -64.9 NC_006560.1 + 146088 0.67 0.441676
Target:  5'- cGGCGGGCCcACUGcggcuccGCGUCGGCcaGGCa -3'
miRNA:   3'- -CCGCCCGGcUGAC-------CGUGGCCGa-CCGc -5'
31028 5' -64.9 NC_006560.1 + 145835 0.69 0.362281
Target:  5'- cGGCGGGCCGGg-GGCGCCcccCUcGGCc -3'
miRNA:   3'- -CCGCCCGGCUgaCCGUGGcc-GA-CCGc -5'
31028 5' -64.9 NC_006560.1 + 144393 0.67 0.434054
Target:  5'- cGCGGGCCGGCgGGCcCCccgGGCcuccGCGa -3'
miRNA:   3'- cCGCCCGGCUGaCCGuGG---CCGac--CGC- -5'
31028 5' -64.9 NC_006560.1 + 144101 0.67 0.476436
Target:  5'- uGGUGGucuccGCCGGCcccugccUGGCuCCGGCggccgcGGCGg -3'
miRNA:   3'- -CCGCC-----CGGCUG-------ACCGuGGCCGa-----CCGC- -5'
31028 5' -64.9 NC_006560.1 + 142742 0.68 0.401129
Target:  5'- cGGCGGaGcCCGGCgcccgGGCcCCGGg-GGCGc -3'
miRNA:   3'- -CCGCC-C-GGCUGa----CCGuGGCCgaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 142687 0.69 0.34749
Target:  5'- cGGCGGaCCGGagggGGCGcCCGGCcGGCc -3'
miRNA:   3'- -CCGCCcGGCUga--CCGU-GGCCGaCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.