miRNA display CGI


Results 1 - 20 of 245 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31029 5' -59.1 NC_006560.1 + 150503 0.68 0.644067
Target:  5'- cCGCGGuCCCgGCCCCGCCggCGuuuuuuuCCg -3'
miRNA:   3'- -GUGUCuGGGgUGGGGUGGuaGCu------GGa -5'
31029 5' -59.1 NC_006560.1 + 150471 0.76 0.27394
Target:  5'- gGCcGGCCCCGCCCCGCgGUccCGGCCc -3'
miRNA:   3'- gUGuCUGGGGUGGGGUGgUA--GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 150408 0.74 0.320454
Target:  5'- gGCGGGCCCUccccgcgccccgcGCCCCGCCcccgCGGCCg -3'
miRNA:   3'- gUGUCUGGGG-------------UGGGGUGGua--GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 150105 0.69 0.603005
Target:  5'- aGCAGGCgcgagcgCCCACCCgcgCGCCggCGGCCUc -3'
miRNA:   3'- gUGUCUG-------GGGUGGG---GUGGuaGCUGGA- -5'
31029 5' -59.1 NC_006560.1 + 150056 0.66 0.770548
Target:  5'- cCGCGGcgGCCgCGCCCCGCgccCGGCCg -3'
miRNA:   3'- -GUGUC--UGGgGUGGGGUGguaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 149617 0.71 0.465132
Target:  5'- cCACGGACCCCgggaccaccgacucACCCCAggaccgcCCAcCGACCc -3'
miRNA:   3'- -GUGUCUGGGG--------------UGGGGU-------GGUaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 149567 0.66 0.769627
Target:  5'- cCACGGACCCCGggaCCACCGacUCaccccagGACCg -3'
miRNA:   3'- -GUGUCUGGGGUgg-GGUGGU--AG-------CUGGa -5'
31029 5' -59.1 NC_006560.1 + 148737 0.67 0.751917
Target:  5'- aGCAuauCCCCGCCCCGuuGgggCGGCCc -3'
miRNA:   3'- gUGUcu-GGGGUGGGGUggUa--GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 148641 0.69 0.604004
Target:  5'- gGCGGGCCCCG-CCgGCCGgagacgCGGCCc -3'
miRNA:   3'- gUGUCUGGGGUgGGgUGGUa-----GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 146089 0.68 0.644067
Target:  5'- gGCGGGCCCacugcgGCUCCG-CGUCGGCCa -3'
miRNA:   3'- gUGUCUGGGg-----UGGGGUgGUAGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 145875 0.66 0.797584
Target:  5'- gCGCGGcgaGCCCCACCCCcgcguCCcuacggGUCGcCCUc -3'
miRNA:   3'- -GUGUC---UGGGGUGGGGu----GG------UAGCuGGA- -5'
31029 5' -59.1 NC_006560.1 + 145836 0.66 0.788704
Target:  5'- gGCGGGCCgggggCGCCCC-CC-UCGGCCc -3'
miRNA:   3'- gUGUCUGGg----GUGGGGuGGuAGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 145641 0.71 0.506103
Target:  5'- uGCGGcCCCUGCCCCcagagACCAcgCGACCa -3'
miRNA:   3'- gUGUCuGGGGUGGGG-----UGGUa-GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 145587 0.65 0.805454
Target:  5'- -cCGGGCCCCgcucgcuGCCCCGCCugcCGccccACCUg -3'
miRNA:   3'- guGUCUGGGG-------UGGGGUGGua-GC----UGGA- -5'
31029 5' -59.1 NC_006560.1 + 145557 0.74 0.32117
Target:  5'- aCGCccGGCCCCGCCCgGCCGU-GACCg -3'
miRNA:   3'- -GUGu-CUGGGGUGGGgUGGUAgCUGGa -5'
31029 5' -59.1 NC_006560.1 + 145526 0.7 0.564258
Target:  5'- gGCGGGCCUCGaCCCGCCcUCGGCg- -3'
miRNA:   3'- gUGUCUGGGGUgGGGUGGuAGCUGga -5'
31029 5' -59.1 NC_006560.1 + 145295 0.69 0.604004
Target:  5'- gGCGGGCCUCGgcCCCCACCcUCcGCCc -3'
miRNA:   3'- gUGUCUGGGGU--GGGGUGGuAGcUGGa -5'
31029 5' -59.1 NC_006560.1 + 145107 0.68 0.664073
Target:  5'- gGCAGcCCCCGCCCC-CCGUgucCCUg -3'
miRNA:   3'- gUGUCuGGGGUGGGGuGGUAgcuGGA- -5'
31029 5' -59.1 NC_006560.1 + 145040 0.72 0.450664
Target:  5'- gGCcGACCCCguGCCgCCGCCGggCGGCCUc -3'
miRNA:   3'- gUGuCUGGGG--UGG-GGUGGUa-GCUGGA- -5'
31029 5' -59.1 NC_006560.1 + 144969 0.72 0.441748
Target:  5'- -cCGGGCCCCGCCCCcCCGaCgGACCc -3'
miRNA:   3'- guGUCUGGGGUGGGGuGGUaG-CUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.