miRNA display CGI


Results 1 - 20 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 150203 0.68 0.797186
Target:  5'- gAGUGagGGUGGCGAGCgCGCggacGCugCCg -3'
miRNA:   3'- gUCGCagUCGUCGCUUG-GCG----UGugGG- -5'
31030 3' -56.9 NC_006560.1 + 150036 0.7 0.650174
Target:  5'- aCGGCGggcgaggacgaccUCcGCGGCG-GCCGCGC-CCCg -3'
miRNA:   3'- -GUCGC-------------AGuCGUCGCuUGGCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 150002 0.71 0.590176
Target:  5'- -cGCGcUCGGgAccGCGGGCgGCGCACCCc -3'
miRNA:   3'- guCGC-AGUCgU--CGCUUGgCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 149930 0.69 0.731357
Target:  5'- gCGGCGUCGGU----GGCCGCACucgauCCCg -3'
miRNA:   3'- -GUCGCAGUCGucgcUUGGCGUGu----GGG- -5'
31030 3' -56.9 NC_006560.1 + 147987 0.68 0.788155
Target:  5'- uCGGCGUCGGaGGCGGGgCGguCgcgGCCCc -3'
miRNA:   3'- -GUCGCAGUCgUCGCUUgGCguG---UGGG- -5'
31030 3' -56.9 NC_006560.1 + 147123 0.69 0.701686
Target:  5'- -cGCGggccgCGGC-GCGAGgCGCGCGCgCCg -3'
miRNA:   3'- guCGCa----GUCGuCGCUUgGCGUGUG-GG- -5'
31030 3' -56.9 NC_006560.1 + 146838 0.68 0.797186
Target:  5'- gGGCGUgcugCGGCGGCGcggggcggGGCgGCGCccgGCCCa -3'
miRNA:   3'- gUCGCA----GUCGUCGC--------UUGgCGUG---UGGG- -5'
31030 3' -56.9 NC_006560.1 + 146543 0.67 0.829253
Target:  5'- gGGCGcgGGCAGCGAGgcccgcuuggguccCCGCgagccggagGCGCCCc -3'
miRNA:   3'- gUCGCagUCGUCGCUU--------------GGCG---------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 146108 0.67 0.839963
Target:  5'- -cGCGUCggccaGGCAGCGcGCCagguugcagucGCGC-CCCa -3'
miRNA:   3'- guCGCAG-----UCGUCGCuUGG-----------CGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 146079 0.71 0.600312
Target:  5'- aGGCGggAGCGGCGGGCC-CACugCg -3'
miRNA:   3'- gUCGCagUCGUCGCUUGGcGUGugGg -5'
31030 3' -56.9 NC_006560.1 + 145869 0.78 0.249242
Target:  5'- -cGCGUCGcGCGGCGAGCCcCACcCCCg -3'
miRNA:   3'- guCGCAGU-CGUCGCUUGGcGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 145824 0.73 0.482025
Target:  5'- cCGGCcUCGcGCGGCGGGCCGgggGCGCCCc -3'
miRNA:   3'- -GUCGcAGU-CGUCGCUUGGCg--UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 144373 0.7 0.671493
Target:  5'- gCGGCGgcaggggCGGCGuccGCGGGCCGgCGgGCCCc -3'
miRNA:   3'- -GUCGCa------GUCGU---CGCUUGGC-GUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 144130 0.68 0.749767
Target:  5'- cCGGCGgccgCGGCGGCGcccccccGGCUcgGCAgGCCCu -3'
miRNA:   3'- -GUCGCa---GUCGUCGC-------UUGG--CGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 143394 0.68 0.750727
Target:  5'- gGGCGgCGGCccucGGCGcagacacacaGGCgCGCACACCCc -3'
miRNA:   3'- gUCGCaGUCG----UCGC----------UUG-GCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 143066 0.71 0.620646
Target:  5'- -cGCGUCcccGguGCGAccuCCGCGCcCCCg -3'
miRNA:   3'- guCGCAGu--CguCGCUu--GGCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 142674 0.74 0.454142
Target:  5'- gGGUGaggggCGGCGGCGGACCGgaggggGCGCCCg -3'
miRNA:   3'- gUCGCa----GUCGUCGCUUGGCg-----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 142557 0.69 0.731357
Target:  5'- -cGCGUCGGaC-GCGGGCCGC-CGgCCu -3'
miRNA:   3'- guCGCAGUC-GuCGCUUGGCGuGUgGG- -5'
31030 3' -56.9 NC_006560.1 + 142294 0.66 0.885076
Target:  5'- gCGGCGggcgCGGcCGGCGccGGCCGCugGagcuCCCc -3'
miRNA:   3'- -GUCGCa---GUC-GUCGC--UUGGCGugU----GGG- -5'
31030 3' -56.9 NC_006560.1 + 142197 0.66 0.847987
Target:  5'- aGGCG-CGGCcucCGGGCgGCGCGCCa -3'
miRNA:   3'- gUCGCaGUCGuc-GCUUGgCGUGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.