miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 5' -54.8 NC_006560.1 + 148890 0.68 0.867954
Target:  5'- -gGGAuCUUCCGGG-CUCuCCCCGCUGGg -3'
miRNA:   3'- caUUU-GAGGGCUUaGAG-GGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 148087 0.69 0.827848
Target:  5'- -gGAGCUCCUcguccaGGAgggCgUCCCCCGCCGc -3'
miRNA:   3'- caUUUGAGGG------CUUa--G-AGGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 147194 0.74 0.561437
Target:  5'- ----cCUCCCc---CUCCCCCGCCGGa -3'
miRNA:   3'- cauuuGAGGGcuuaGAGGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 144887 0.67 0.908935
Target:  5'- cUGAGCgCCCauguUCUCCCCgGCCGc -3'
miRNA:   3'- cAUUUGaGGGcuu-AGAGGGGgCGGUc -5'
31030 5' -54.8 NC_006560.1 + 144095 0.66 0.936544
Target:  5'- ---uGCUCCUGGugGUCUCCgCCgGCCc- -3'
miRNA:   3'- cauuUGAGGGCU--UAGAGG-GGgCGGuc -5'
31030 5' -54.8 NC_006560.1 + 144069 0.66 0.931508
Target:  5'- ---cGCcCCCGGcgC-CCCCCGCCc- -3'
miRNA:   3'- cauuUGaGGGCUuaGaGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 143989 0.66 0.936544
Target:  5'- ----uCUCUCuc-UCUCCCCCGCCu- -3'
miRNA:   3'- cauuuGAGGGcuuAGAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 143481 0.7 0.792462
Target:  5'- aGUGGGCgggcgCCCGGcg-UCCCCCGCCc- -3'
miRNA:   3'- -CAUUUGa----GGGCUuagAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 143111 0.68 0.88253
Target:  5'- ------cCCCGGAgccCcCCCCCGCCGGu -3'
miRNA:   3'- cauuugaGGGCUUa--GaGGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 142391 0.66 0.941336
Target:  5'- -aGGGCcgagCCCGAg---CCCCCGCCGc -3'
miRNA:   3'- caUUUGa---GGGCUuagaGGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 142017 0.72 0.674563
Target:  5'- ---cGCUCCCccccggCUCCCCCGCCc- -3'
miRNA:   3'- cauuUGAGGGcuua--GAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 136160 0.68 0.875353
Target:  5'- -gGGGCUCCUGggUCgCCaCCUGCUg- -3'
miRNA:   3'- caUUUGAGGGCuuAGaGG-GGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 134018 0.67 0.896201
Target:  5'- ---uGCUCgCG-GUCgagcgcCCCCCGCCGGg -3'
miRNA:   3'- cauuUGAGgGCuUAGa-----GGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 126384 0.71 0.735154
Target:  5'- -gGGGCgccgCCCGggUCUCCgCCGCg-- -3'
miRNA:   3'- caUUUGa---GGGCuuAGAGGgGGCGguc -5'
31030 5' -54.8 NC_006560.1 + 113640 0.7 0.744989
Target:  5'- aUGAACgcgCCCGg--CUUCCCCGCgGGg -3'
miRNA:   3'- cAUUUGa--GGGCuuaGAGGGGGCGgUC- -5'
31030 5' -54.8 NC_006560.1 + 112406 0.74 0.561437
Target:  5'- -cGGGCcCCCGGGcCcCCCCCGCCGGg -3'
miRNA:   3'- caUUUGaGGGCUUaGaGGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 110617 0.71 0.694999
Target:  5'- --cGGCUCCCGcGUCcacgCCCCCGCUc- -3'
miRNA:   3'- cauUUGAGGGCuUAGa---GGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 105990 0.7 0.754723
Target:  5'- ---uGCUCCCGGg---CCCgCCGCCGGg -3'
miRNA:   3'- cauuUGAGGGCUuagaGGG-GGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 103635 1.08 0.004558
Target:  5'- gGUAAACUCCCGAAUCUCCCCCGCCAGc -3'
miRNA:   3'- -CAUUUGAGGGCUUAGAGGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 95773 0.7 0.791545
Target:  5'- --cGACcCCCGAggGUCUCUaccgcuaCCCGCCGGg -3'
miRNA:   3'- cauUUGaGGGCU--UAGAGG-------GGGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.