Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31031 | 5' | -58.7 | NC_006560.1 | + | 51593 | 0.66 | 0.80543 |
Target: 5'- ----gCUGGccUGCCUCGCCgCCGCGg -3' miRNA: 3'- uagaaGACCucAUGGGGCGGaGGCGC- -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 11563 | 0.66 | 0.769292 |
Target: 5'- cUCUUC-GGucu-CCCCGaCCUCCGCc -3' miRNA: 3'- uAGAAGaCCucauGGGGC-GGAGGCGc -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 125414 | 0.67 | 0.750474 |
Target: 5'- -aCUUCccGGAGUGCCCCcuGCaC-CCGCa -3' miRNA: 3'- uaGAAGa-CCUCAUGGGG--CG-GaGGCGc -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 108302 | 0.67 | 0.744746 |
Target: 5'- -gCUUCUGGAGcggggucagcGCCCgCGCCgcacccagaaagggCCGCGg -3' miRNA: 3'- uaGAAGACCUCa---------UGGG-GCGGa-------------GGCGC- -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 30097 | 0.67 | 0.740908 |
Target: 5'- ------gGGAGgcgGCCCCgGCCUCCGUc -3' miRNA: 3'- uagaagaCCUCa--UGGGG-CGGAGGCGc -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 112048 | 0.67 | 0.740908 |
Target: 5'- uUCUUCUGGGGcaaggACCgCCGCgugCUCCGg- -3' miRNA: 3'- uAGAAGACCUCa----UGG-GGCG---GAGGCgc -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 40135 | 0.67 | 0.721507 |
Target: 5'- cAUCUgcaUGcGGaGCCCCGCC-CCGCGu -3' miRNA: 3'- -UAGAag-ACcUCaUGGGGCGGaGGCGC- -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 145799 | 0.67 | 0.71955 |
Target: 5'- uUCUUCcGGGGcggcgggcacacGCCCgGCCUCgCGCGg -3' miRNA: 3'- uAGAAGaCCUCa-----------UGGGgCGGAG-GCGC- -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 106150 | 0.68 | 0.691867 |
Target: 5'- gAUCUUCggGGAGgggGCCCCGaCCgagCC-CGg -3' miRNA: 3'- -UAGAAGa-CCUCa--UGGGGC-GGa--GGcGC- -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 18856 | 0.68 | 0.691867 |
Target: 5'- cGUCUcgccUCUGGGcGgggccgccGCCCCGCCcgCCGUGg -3' miRNA: 3'- -UAGA----AGACCU-Ca-------UGGGGCGGa-GGCGC- -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 107466 | 0.68 | 0.691867 |
Target: 5'- cGUCggCccgGGGGcGCUcgCCGCCUCCGCGc -3' miRNA: 3'- -UAGaaGa--CCUCaUGG--GGCGGAGGCGC- -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 71812 | 0.68 | 0.681879 |
Target: 5'- -cCUgCUGGAgacccaGUGCCCCGCCcacgacuucUUCGCGg -3' miRNA: 3'- uaGAaGACCU------CAUGGGGCGG---------AGGCGC- -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 79576 | 0.68 | 0.67185 |
Target: 5'- ------cGGAGccgcGCCCCGCC-CCGCGg -3' miRNA: 3'- uagaagaCCUCa---UGGGGCGGaGGCGC- -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 23198 | 0.68 | 0.67185 |
Target: 5'- uUCggCUGGGGccugGCCCaCGCCgCCGCc -3' miRNA: 3'- uAGaaGACCUCa---UGGG-GCGGaGGCGc -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 129138 | 0.68 | 0.67185 |
Target: 5'- uUCUUCgUGGAgaaGUACCuCCGCC-CCGaCGu -3' miRNA: 3'- uAGAAG-ACCU---CAUGG-GGCGGaGGC-GC- -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 119297 | 0.68 | 0.651706 |
Target: 5'- -cUUUCUGGAc-GCCCCGCCgcccaaugCCGCc -3' miRNA: 3'- uaGAAGACCUcaUGGGGCGGa-------GGCGc -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 76523 | 0.69 | 0.631502 |
Target: 5'- cGUCUUC-GGGGcGCaCCCGCUgaccgCCGCGc -3' miRNA: 3'- -UAGAAGaCCUCaUG-GGGCGGa----GGCGC- -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 26122 | 0.69 | 0.631502 |
Target: 5'- -gCUUCgcGGGG-GCCCCGCCggggCUGCGu -3' miRNA: 3'- uaGAAGa-CCUCaUGGGGCGGa---GGCGC- -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 139 | 0.69 | 0.611299 |
Target: 5'- ------cGGGGccgGCCCCGCC-CCGCGg -3' miRNA: 3'- uagaagaCCUCa--UGGGGCGGaGGCGC- -5' |
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31031 | 5' | -58.7 | NC_006560.1 | + | 28556 | 0.69 | 0.611299 |
Target: 5'- ----cCUGGGGgccGCCCCGCg-CCGCGg -3' miRNA: 3'- uagaaGACCUCa--UGGGGCGgaGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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