miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31057 5' -56.2 NC_006560.1 + 120102 0.66 0.9016
Target:  5'- cGGGGAccccucGGcguGCUGCgcCCUGggcccCGGGGCg -3'
miRNA:   3'- -CCCCU------CCu--CGACGa-GGACau---GUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 140508 0.66 0.9016
Target:  5'- gGGGGAGaaGGGCUGCggggCCgcuucaucGCcGGGCg -3'
miRNA:   3'- -CCCCUC--CUCGACGa---GGaca-----UGuUCCG- -5'
31057 5' -56.2 NC_006560.1 + 115793 0.66 0.9016
Target:  5'- cGGcGAGcGGCgccUGC-CCgUGUACGAGGCg -3'
miRNA:   3'- cCC-CUCcUCG---ACGaGG-ACAUGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 11617 0.66 0.9016
Target:  5'- cGGcGGGGGAGUcGCUUCcGgggGCucGGCg -3'
miRNA:   3'- -CC-CCUCCUCGaCGAGGaCa--UGuuCCG- -5'
31057 5' -56.2 NC_006560.1 + 99374 0.66 0.897744
Target:  5'- uGGGGcGGGGGCgcccgcgcgcgcaugUgcgccaGCUCCUGcUGCAAGGa -3'
miRNA:   3'- -CCCC-UCCUCG---------------A------CGAGGAC-AUGUUCCg -5'
31057 5' -56.2 NC_006560.1 + 132217 0.66 0.895127
Target:  5'- aGGcGGAGGcgguGUUGCgcggggcCCUG-GCGGGGCu -3'
miRNA:   3'- -CC-CCUCCu---CGACGa------GGACaUGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 27220 0.66 0.895127
Target:  5'- cGGGGcGGGGCcgGgaCCgcgGgGCGGGGCc -3'
miRNA:   3'- -CCCCuCCUCGa-CgaGGa--CaUGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 56422 0.66 0.895127
Target:  5'- cGGGGAGGgugcGGUUGCcCCgcgccgggGUcgAgGAGGCg -3'
miRNA:   3'- -CCCCUCC----UCGACGaGGa-------CA--UgUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 73629 0.66 0.895127
Target:  5'- cGGGAGGuGCgcgGCgcCCUGgacgcgcugGCGAGGa -3'
miRNA:   3'- cCCCUCCuCGa--CGa-GGACa--------UGUUCCg -5'
31057 5' -56.2 NC_006560.1 + 130118 0.66 0.895127
Target:  5'- uGGGccGAGGAGagcguCUGCgccgucacCCUGUACGcGGCc -3'
miRNA:   3'- -CCC--CUCCUC-----GACGa-------GGACAUGUuCCG- -5'
31057 5' -56.2 NC_006560.1 + 9881 0.66 0.888423
Target:  5'- cGGGGGGGcGGCacGCUgCgcgaGCAGGGCc -3'
miRNA:   3'- -CCCCUCC-UCGa-CGAgGaca-UGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 4252 0.66 0.881492
Target:  5'- cGGuGAugaaGGAGCUGCUgUUGcGCcGGGCg -3'
miRNA:   3'- cCC-CU----CCUCGACGAgGACaUGuUCCG- -5'
31057 5' -56.2 NC_006560.1 + 128283 0.66 0.881492
Target:  5'- gGGGGGGGAGg-GCcCCgggGgcgcgcccGCGGGGCg -3'
miRNA:   3'- -CCCCUCCUCgaCGaGGa--Ca-------UGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 15705 0.66 0.881492
Target:  5'- aGGGGcgccgcAGGGGCgGCgggCCgGcACGGGGCc -3'
miRNA:   3'- -CCCC------UCCUCGaCGa--GGaCaUGUUCCG- -5'
31057 5' -56.2 NC_006560.1 + 55330 0.66 0.877226
Target:  5'- cGGGGcGGGGGCucguggcggccguggUGCUCCaGcACGGGGa -3'
miRNA:   3'- -CCCC-UCCUCG---------------ACGAGGaCaUGUUCCg -5'
31057 5' -56.2 NC_006560.1 + 11349 0.66 0.874339
Target:  5'- aGGGGGGGcGGUagaUGCgggCCggGUGCGGccGGCg -3'
miRNA:   3'- -CCCCUCC-UCG---ACGa--GGa-CAUGUU--CCG- -5'
31057 5' -56.2 NC_006560.1 + 50485 0.66 0.874339
Target:  5'- cGGGAGGAggcucuggcGCUGCUCCccaucgACcagauGGGCc -3'
miRNA:   3'- cCCCUCCU---------CGACGAGGaca---UGu----UCCG- -5'
31057 5' -56.2 NC_006560.1 + 146074 0.67 0.867715
Target:  5'- cGGGGAggcgGGAGCggcgggcccacugcgGCUCCgcgucgGCcAGGCa -3'
miRNA:   3'- -CCCCU----CCUCGa--------------CGAGGaca---UGuUCCG- -5'
31057 5' -56.2 NC_006560.1 + 29606 0.67 0.866969
Target:  5'- cGGcGGGGGAcGCc-CUCCUGgACGAGGa -3'
miRNA:   3'- -CC-CCUCCU-CGacGAGGACaUGUUCCg -5'
31057 5' -56.2 NC_006560.1 + 134192 0.67 0.866969
Target:  5'- -uGGcGGAGCUGCUgCUG-GCGcGGGCc -3'
miRNA:   3'- ccCCuCCUCGACGAgGACaUGU-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.