miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31058 5' -58.6 NC_006560.1 + 86685 0.66 0.78761
Target:  5'- aCAGCgUGCUGaagcagaGGuUGUGGGCCUGg- -3'
miRNA:   3'- -GUUGgACGACga-----CC-ACGCCCGGAUga -5'
31058 5' -58.6 NC_006560.1 + 77209 0.66 0.769044
Target:  5'- gGACCUGCggaUGGUGCGcuGCCgggGCg -3'
miRNA:   3'- gUUGGACGacgACCACGCc-CGGa--UGa -5'
31058 5' -58.6 NC_006560.1 + 86468 0.66 0.768102
Target:  5'- gCGGCCUGCUGCUugucgaggagcacGGccuccuCGGGCgUGCUc -3'
miRNA:   3'- -GUUGGACGACGA-------------CCac----GCCCGgAUGA- -5'
31058 5' -58.6 NC_006560.1 + 94685 0.66 0.759574
Target:  5'- aCAACCUGaCggaGCUGGcGCGGcGCgaGCUc -3'
miRNA:   3'- -GUUGGAC-Ga--CGACCaCGCC-CGgaUGA- -5'
31058 5' -58.6 NC_006560.1 + 136242 0.66 0.759574
Target:  5'- gCGGCCggGCUGCgacccGUGCuGGUCUGCg -3'
miRNA:   3'- -GUUGGa-CGACGac---CACGcCCGGAUGa -5'
31058 5' -58.6 NC_006560.1 + 51974 0.66 0.759574
Target:  5'- --uCCggGCgGCgGGcgGCGGGCCUGCc -3'
miRNA:   3'- guuGGa-CGaCGaCCa-CGCCCGGAUGa -5'
31058 5' -58.6 NC_006560.1 + 24503 0.66 0.74999
Target:  5'- --uCCUGCUcgccgcGCUGGccaaccgccucUGCGGGCCcgACa -3'
miRNA:   3'- guuGGACGA------CGACC-----------ACGCCCGGa-UGa -5'
31058 5' -58.6 NC_006560.1 + 118193 0.66 0.74999
Target:  5'- aGAuCCUcGC-GCUGGUgcaGCGGGCCgUGCg -3'
miRNA:   3'- gUU-GGA-CGaCGACCA---CGCCCGG-AUGa -5'
31058 5' -58.6 NC_006560.1 + 104409 0.67 0.730523
Target:  5'- aGACCgGCgGCUcGUgGCGGGCCgACUg -3'
miRNA:   3'- gUUGGaCGaCGAcCA-CGCCCGGaUGA- -5'
31058 5' -58.6 NC_006560.1 + 75784 0.67 0.730523
Target:  5'- -cGCCUGCUGCgccUGGcgGaGGGgCUGCUg -3'
miRNA:   3'- guUGGACGACG---ACCa-CgCCCgGAUGA- -5'
31058 5' -58.6 NC_006560.1 + 59378 0.67 0.720657
Target:  5'- uCAGCCaugGCUGgUGGUGCGGGa----- -3'
miRNA:   3'- -GUUGGa--CGACgACCACGCCCggauga -5'
31058 5' -58.6 NC_006560.1 + 68418 0.67 0.720657
Target:  5'- --gUCUGCUGgaGGcgGCGGGaCUGCg -3'
miRNA:   3'- guuGGACGACgaCCa-CGCCCgGAUGa -5'
31058 5' -58.6 NC_006560.1 + 113840 0.67 0.720657
Target:  5'- -cACCaGCUGC-GGa-CGGGCCUGCa -3'
miRNA:   3'- guUGGaCGACGaCCacGCCCGGAUGa -5'
31058 5' -58.6 NC_006560.1 + 71974 0.67 0.710715
Target:  5'- cCGGCCUucGUcGCgaaGGUGCGGGCCg--- -3'
miRNA:   3'- -GUUGGA--CGaCGa--CCACGCCCGGauga -5'
31058 5' -58.6 NC_006560.1 + 5160 0.67 0.710715
Target:  5'- gGGCCgggGCcGCgGGgGCGGGCCgcgGCg -3'
miRNA:   3'- gUUGGa--CGaCGaCCaCGCCCGGa--UGa -5'
31058 5' -58.6 NC_006560.1 + 78387 0.67 0.710715
Target:  5'- gGACCUGgUGCUGGcggccacgcuccUGgGGGCCc--- -3'
miRNA:   3'- gUUGGACgACGACC------------ACgCCCGGauga -5'
31058 5' -58.6 NC_006560.1 + 81387 0.67 0.680526
Target:  5'- aCGGCCcGCUGCUGc--CGGGCCaGCg -3'
miRNA:   3'- -GUUGGaCGACGACcacGCCCGGaUGa -5'
31058 5' -58.6 NC_006560.1 + 126222 0.68 0.670372
Target:  5'- uCGACCcuccgggggUGgUGUUGGaUGCGGGCgUACg -3'
miRNA:   3'- -GUUGG---------ACgACGACC-ACGCCCGgAUGa -5'
31058 5' -58.6 NC_006560.1 + 68034 0.68 0.670372
Target:  5'- aCGGCCcGCUGCaGGcucugcUGCGGGCCcugACc -3'
miRNA:   3'- -GUUGGaCGACGaCC------ACGCCCGGa--UGa -5'
31058 5' -58.6 NC_006560.1 + 51567 0.68 0.628505
Target:  5'- -cGCCUGCUgggguuugccgacGC-GGUGCuGGCCUGCc -3'
miRNA:   3'- guUGGACGA-------------CGaCCACGcCCGGAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.