miRNA display CGI


Results 1 - 20 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31069 5' -66.6 NC_006560.1 + 150511 0.68 0.338717
Target:  5'- -cCGGCCC-CGCCGgcguuuuuuUCCGCGcGCGCgCCg -3'
miRNA:   3'- caGCCGGGcGCGGC---------GGGUGC-CGUG-GG- -5'
31069 5' -66.6 NC_006560.1 + 150470 0.7 0.273399
Target:  5'- --gGGCCgGCcCCGcCCCGCGGUcccgGCCCc -3'
miRNA:   3'- cagCCGGgCGcGGC-GGGUGCCG----UGGG- -5'
31069 5' -66.6 NC_006560.1 + 150422 0.67 0.390791
Target:  5'- -gCGcCCCGCGCCccgccCCCGCGGCcgcgGCCg -3'
miRNA:   3'- caGCcGGGCGCGGc----GGGUGCCG----UGGg -5'
31069 5' -66.6 NC_006560.1 + 150294 0.73 0.169397
Target:  5'- --aGGCCCGCGCgCGCgccgCCGCGGgaggGCCCg -3'
miRNA:   3'- cagCCGGGCGCG-GCG----GGUGCCg---UGGG- -5'
31069 5' -66.6 NC_006560.1 + 150058 0.71 0.23396
Target:  5'- -gCGGCggCCGCGCCccgcGCCCGgCcGCGCCCg -3'
miRNA:   3'- caGCCG--GGCGCGG----CGGGU-GcCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 149934 0.69 0.311302
Target:  5'- cGUCGGUggCCGCacucgaucccgGCUGCCCGCGcGCGCg- -3'
miRNA:   3'- -CAGCCG--GGCG-----------CGGCGGGUGC-CGUGgg -5'
31069 5' -66.6 NC_006560.1 + 149897 0.66 0.447819
Target:  5'- --gGGCCC-CGCgCGCCgaaggaACGGCGgCCg -3'
miRNA:   3'- cagCCGGGcGCG-GCGGg-----UGCCGUgGG- -5'
31069 5' -66.6 NC_006560.1 + 149839 0.69 0.29187
Target:  5'- -gCGGCCCcCgGCCGCgggcgggagacCCcCGGCACCCc -3'
miRNA:   3'- caGCCGGGcG-CGGCG-----------GGuGCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 149489 0.7 0.255878
Target:  5'- -gCGGCCCGgGCCGacgcucCCCGCccgGGCcgccgGCCCg -3'
miRNA:   3'- caGCCGGGCgCGGC------GGGUG---CCG-----UGGG- -5'
31069 5' -66.6 NC_006560.1 + 149285 0.78 0.070583
Target:  5'- cUCGGCCCGCcccggcCCGCCC-CGGCccaACCCg -3'
miRNA:   3'- cAGCCGGGCGc-----GGCGGGuGCCG---UGGG- -5'
31069 5' -66.6 NC_006560.1 + 148664 0.71 0.223606
Target:  5'- -gCGGCCCaaauacgggGCGCCGUggGCGGC-CCCg -3'
miRNA:   3'- caGCCGGG---------CGCGGCGggUGCCGuGGG- -5'
31069 5' -66.6 NC_006560.1 + 147934 0.69 0.29187
Target:  5'- --gGGCCCGCgGCC-CCCGggaGGCggGCCCg -3'
miRNA:   3'- cagCCGGGCG-CGGcGGGUg--CCG--UGGG- -5'
31069 5' -66.6 NC_006560.1 + 147124 0.71 0.213643
Target:  5'- -gCGGgCCGCGgCGCgaggcgcgcgcgCCGCGGCGCCg -3'
miRNA:   3'- caGCCgGGCGCgGCG------------GGUGCCGUGGg -5'
31069 5' -66.6 NC_006560.1 + 146999 0.68 0.324109
Target:  5'- -gCGGCUCGCgGCCGCggggccaccggggCCACGGgggGCCCc -3'
miRNA:   3'- caGCCGGGCG-CGGCG-------------GGUGCCg--UGGG- -5'
31069 5' -66.6 NC_006560.1 + 146872 0.67 0.37463
Target:  5'- -cCGGCCCaGCGCCugggccagGgCCugGGCcagggccgccuggGCCCg -3'
miRNA:   3'- caGCCGGG-CGCGG--------CgGGugCCG-------------UGGG- -5'
31069 5' -66.6 NC_006560.1 + 146702 0.66 0.473635
Target:  5'- aGUCuGGCCUGgGCCugGgCCugGGCcuggGCCUg -3'
miRNA:   3'- -CAG-CCGGGCgCGG--CgGGugCCG----UGGG- -5'
31069 5' -66.6 NC_006560.1 + 146557 0.73 0.164288
Target:  5'- --aGGCCCGCuuggguccccgcgaGCCggaggcGCCCcCGGCGCCCg -3'
miRNA:   3'- cagCCGGGCG--------------CGG------CGGGuGCCGUGGG- -5'
31069 5' -66.6 NC_006560.1 + 146101 0.67 0.398645
Target:  5'- -gCGGCuCCGCGUCGgCCAgGcaGCGCgCCa -3'
miRNA:   3'- caGCCG-GGCGCGGCgGGUgC--CGUG-GG- -5'
31069 5' -66.6 NC_006560.1 + 145856 0.71 0.218576
Target:  5'- cUCGGCCCcccCGCgCGUCgCGCGGCgaGCCCc -3'
miRNA:   3'- cAGCCGGGc--GCG-GCGG-GUGCCG--UGGG- -5'
31069 5' -66.6 NC_006560.1 + 145824 0.72 0.18602
Target:  5'- -cCGGCCuCGCGCggcggGCCgGgGGCGCCCc -3'
miRNA:   3'- caGCCGG-GCGCGg----CGGgUgCCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.