miRNA display CGI


Results 21 - 40 of 547 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31080 5' -65.6 NC_006560.1 + 45725 0.77 0.091634
Target:  5'- cCCGCGGCGcAGGCGCgccgcgGGCucGCGCCCc -3'
miRNA:   3'- aGGCGCCGC-UCCGUG------CCGu-CGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 118327 0.77 0.091634
Target:  5'- gCCGUGGCGGcGGC-CGGCGGCcCCCGc -3'
miRNA:   3'- aGGCGCCGCU-CCGuGCCGUCGcGGGC- -5'
31080 5' -65.6 NC_006560.1 + 147128 0.77 0.093938
Target:  5'- gCCGCGGCgcGAGGCGCGcgcgccGCGGCGCCg- -3'
miRNA:   3'- aGGCGCCG--CUCCGUGC------CGUCGCGGgc -5'
31080 5' -65.6 NC_006560.1 + 2290 0.77 0.096297
Target:  5'- gCCGCGGCGgaagucGGGCGCgccGGCGGCGgCCGc -3'
miRNA:   3'- aGGCGCCGC------UCCGUG---CCGUCGCgGGC- -5'
31080 5' -65.6 NC_006560.1 + 135064 0.77 0.096297
Target:  5'- aCCGCGGCGAcgucGGCGuCGGgGGCGCCg- -3'
miRNA:   3'- aGGCGCCGCU----CCGU-GCCgUCGCGGgc -5'
31080 5' -65.6 NC_006560.1 + 21038 0.77 0.096297
Target:  5'- gCCGgGGCGGGGCGCccgcGCGGCGUCCc -3'
miRNA:   3'- aGGCgCCGCUCCGUGc---CGUCGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 79453 0.77 0.097257
Target:  5'- cUCCGCGGCGcgugagcccccggcGGCGCGugagccccccGCGGCGCCCGc -3'
miRNA:   3'- -AGGCGCCGCu-------------CCGUGC----------CGUCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 39621 0.77 0.098469
Target:  5'- gCCGCGGCGggcgucggcguccGGGCGCGGCGGagucucCGCUCGg -3'
miRNA:   3'- aGGCGCCGC-------------UCCGUGCCGUC------GCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 140356 0.77 0.098713
Target:  5'- cCCGCgGGCGucGGCGCGGC-GCgGCCCGa -3'
miRNA:   3'- aGGCG-CCGCu-CCGUGCCGuCG-CGGGC- -5'
31080 5' -65.6 NC_006560.1 + 145829 0.77 0.098713
Target:  5'- cUCgCGCGGCG-GGC-CGGgGGCGCCCc -3'
miRNA:   3'- -AG-GCGCCGCuCCGuGCCgUCGCGGGc -5'
31080 5' -65.6 NC_006560.1 + 3784 0.76 0.103716
Target:  5'- aCCGCGGCGc-GCGCGGCcGCcaGCCCGg -3'
miRNA:   3'- aGGCGCCGCucCGUGCCGuCG--CGGGC- -5'
31080 5' -65.6 NC_006560.1 + 5513 0.76 0.103716
Target:  5'- --nGCGGCGAGGguCGGCGGCGgUCGc -3'
miRNA:   3'- aggCGCCGCUCCguGCCGUCGCgGGC- -5'
31080 5' -65.6 NC_006560.1 + 26836 0.76 0.104744
Target:  5'- gCCGgGGaccCGGGGCGCGGCcggccgccgccccccGGCGCCCGu -3'
miRNA:   3'- aGGCgCC---GCUCCGUGCCG---------------UCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 142671 0.76 0.105522
Target:  5'- gCCG-GGUGAGGgGCGGCggcggaccggagggGGCGCCCGg -3'
miRNA:   3'- aGGCgCCGCUCCgUGCCG--------------UCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 19407 0.76 0.106306
Target:  5'- gCCG-GGCGAGucgcCGCGGCGGCGCUCGg -3'
miRNA:   3'- aGGCgCCGCUCc---GUGCCGUCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 103022 0.76 0.106306
Target:  5'- cUCCGCGcccggucgacgcGCGGGGCGCgGGCGGCcGCUCGg -3'
miRNA:   3'- -AGGCGC------------CGCUCCGUG-CCGUCG-CGGGC- -5'
31080 5' -65.6 NC_006560.1 + 48953 0.76 0.108421
Target:  5'- -gCGCGGCcaccgaggagcccGGGGCcgcgcugACGGCGGCGCCCGc -3'
miRNA:   3'- agGCGCCG-------------CUCCG-------UGCCGUCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 102405 0.76 0.108956
Target:  5'- cUCgGCGGCcucGGGCGCGGCcgcGGCGUCCGc -3'
miRNA:   3'- -AGgCGCCGc--UCCGUGCCG---UCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 142714 0.76 0.110576
Target:  5'- gCCGCGGCcccgaggcgcccggGGGGCcCGGCggagcccGGCGCCCGg -3'
miRNA:   3'- aGGCGCCG--------------CUCCGuGCCG-------UCGCGGGC- -5'
31080 5' -65.6 NC_006560.1 + 14252 0.76 0.111395
Target:  5'- cCCGCGGCGGuggaugucgcguuGGCGcCGGCGGCGUcgCCGg -3'
miRNA:   3'- aGGCGCCGCU-------------CCGU-GCCGUCGCG--GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.