miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31089 5' -55.6 NC_006560.1 + 36324 0.72 0.646717
Target:  5'- uGGGGGGGAGGAGGGgGAgGggagGGg -3'
miRNA:   3'- -CCUCUCCUCCUCCUgCUgCaguaCCa -5'
31089 5' -55.6 NC_006560.1 + 30518 0.72 0.646717
Target:  5'- gGGGGAGGGGGAGGG-GGCGgg--GGg -3'
miRNA:   3'- -CCUCUCCUCCUCCUgCUGCaguaCCa -5'
31089 5' -55.6 NC_006560.1 + 36296 0.72 0.646717
Target:  5'- gGGGGAGGGGGAGGAgGGgGgaggGGg -3'
miRNA:   3'- -CCUCUCCUCCUCCUgCUgCaguaCCa -5'
31089 5' -55.6 NC_006560.1 + 40066 0.72 0.656866
Target:  5'- gGGAcGGGGAGG-GGAUGGCGUgcgGUGGg -3'
miRNA:   3'- -CCU-CUCCUCCuCCUGCUGCAg--UACCa -5'
31089 5' -55.6 NC_006560.1 + 47819 0.72 0.666995
Target:  5'- gGGAGGGGAGGgacGGGugGAUGggggCggGGa -3'
miRNA:   3'- -CCUCUCCUCC---UCCugCUGCa---GuaCCa -5'
31089 5' -55.6 NC_006560.1 + 36349 0.71 0.687162
Target:  5'- gGGAGGGGGGGAGGGgGAgGgggagGGg -3'
miRNA:   3'- -CCUCUCCUCCUCCUgCUgCagua-CCa -5'
31089 5' -55.6 NC_006560.1 + 11114 0.71 0.697182
Target:  5'- gGGcGGGGGGGGGGGGCucagcgGGCGUCGaGGg -3'
miRNA:   3'- -CC-UCUCCUCCUCCUG------CUGCAGUaCCa -5'
31089 5' -55.6 NC_006560.1 + 54962 0.71 0.717052
Target:  5'- cGGcGGcGGGGGAGG-CGACGggCGUGGg -3'
miRNA:   3'- -CCuCU-CCUCCUCCuGCUGCa-GUACCa -5'
31089 5' -55.6 NC_006560.1 + 139537 0.7 0.736636
Target:  5'- gGGAcGGGGGGcGGGGGCGgaaggGCGUgGUGGg -3'
miRNA:   3'- -CCU-CUCCUC-CUCCUGC-----UGCAgUACCa -5'
31089 5' -55.6 NC_006560.1 + 33693 0.7 0.746297
Target:  5'- cGGGGAGGAGGGGaGGgGGCGgggaggCggGGg -3'
miRNA:   3'- -CCUCUCCUCCUC-CUgCUGCa-----GuaCCa -5'
31089 5' -55.6 NC_006560.1 + 62309 0.7 0.746297
Target:  5'- gGGAGcGGAGGuGGuuGAUGUCcgGGc -3'
miRNA:   3'- -CCUCuCCUCCuCCugCUGCAGuaCCa -5'
31089 5' -55.6 NC_006560.1 + 76928 0.7 0.765316
Target:  5'- ---cGGGAGGAGGugGugGcCcgGGUc -3'
miRNA:   3'- ccucUCCUCCUCCugCugCaGuaCCA- -5'
31089 5' -55.6 NC_006560.1 + 99296 0.69 0.783868
Target:  5'- uGGGGucGGGGGAGGugGugGggcgCggGGg -3'
miRNA:   3'- -CCUCu-CCUCCUCCugCugCa---GuaCCa -5'
31089 5' -55.6 NC_006560.1 + 32790 0.69 0.783868
Target:  5'- gGGGGAGGGGGGGGcCGGgGgcgcggCcgGGg -3'
miRNA:   3'- -CCUCUCCUCCUCCuGCUgCa-----GuaCCa -5'
31089 5' -55.6 NC_006560.1 + 147059 0.69 0.792946
Target:  5'- cGGGGGGAGGcGGGCGGCGagucggcgaUCAggaUGGg -3'
miRNA:   3'- cCUCUCCUCCuCCUGCUGC---------AGU---ACCa -5'
31089 5' -55.6 NC_006560.1 + 68110 0.69 0.792946
Target:  5'- gGGGGAcgcGGGGGAGGACGcCGUguUGc- -3'
miRNA:   3'- -CCUCU---CCUCCUCCUGCuGCAguACca -5'
31089 5' -55.6 NC_006560.1 + 140486 0.69 0.801882
Target:  5'- gGGcGGAGGAGGugGGGGCGGCGg---GGg -3'
miRNA:   3'- -CC-UCUCCUCC--UCCUGCUGCaguaCCa -5'
31089 5' -55.6 NC_006560.1 + 72255 0.69 0.805414
Target:  5'- cGGAG-GGAcccccgggaccgcgcGGGGGGCGACGUCGa--- -3'
miRNA:   3'- -CCUCuCCU---------------CCUCCUGCUGCAGUacca -5'
31089 5' -55.6 NC_006560.1 + 26975 0.69 0.810666
Target:  5'- cGGGGcGGGGGGGGGCGgGCG-CAcGGg -3'
miRNA:   3'- -CCUCuCCUCCUCCUGC-UGCaGUaCCa -5'
31089 5' -55.6 NC_006560.1 + 27002 0.69 0.819291
Target:  5'- cGGaAGGGGAccuGGGGGACGGCGagAgGGg -3'
miRNA:   3'- -CC-UCUCCU---CCUCCUGCUGCagUaCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.