miRNA display CGI


Results 1 - 20 of 455 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31090 5' -54.3 NC_006560.1 + 88843 0.66 0.971838
Target:  5'- cCCGuguccCACCGAgCcCAUgaugGACGCGGCCGu -3'
miRNA:   3'- -GGCu----GUGGCU-GuGUG----UUGCGCUGGCu -5'
31090 5' -54.3 NC_006560.1 + 16331 0.66 0.971838
Target:  5'- -aGGCGCaGGCACAgCAGCGCcGCCa- -3'
miRNA:   3'- ggCUGUGgCUGUGU-GUUGCGcUGGcu -5'
31090 5' -54.3 NC_006560.1 + 3999 0.66 0.971838
Target:  5'- gCGGCGCCGuaGC-CGGCGaGGCCGGg -3'
miRNA:   3'- gGCUGUGGCugUGuGUUGCgCUGGCU- -5'
31090 5' -54.3 NC_006560.1 + 19573 0.66 0.971838
Target:  5'- gCGGCACCGGgcgGCGC--CGCGGCCc- -3'
miRNA:   3'- gGCUGUGGCUg--UGUGuuGCGCUGGcu -5'
31090 5' -54.3 NC_006560.1 + 35935 0.66 0.971838
Target:  5'- gCCGcucuCGCCGcGCGC-CAACGCGGgCGc -3'
miRNA:   3'- -GGCu---GUGGC-UGUGuGUUGCGCUgGCu -5'
31090 5' -54.3 NC_006560.1 + 49254 0.66 0.971838
Target:  5'- gCGGCGCCGgucgaccgucccGCGCACGgACGUGAguCUGGg -3'
miRNA:   3'- gGCUGUGGC------------UGUGUGU-UGCGCU--GGCU- -5'
31090 5' -54.3 NC_006560.1 + 60046 0.66 0.971838
Target:  5'- uUCGuCACCGAC-CGCGGgGUGgacugcACCGAg -3'
miRNA:   3'- -GGCuGUGGCUGuGUGUUgCGC------UGGCU- -5'
31090 5' -54.3 NC_006560.1 + 87144 0.66 0.971838
Target:  5'- gCCGAuCACCc-CGCGCuGCGCGGgcCCGGc -3'
miRNA:   3'- -GGCU-GUGGcuGUGUGuUGCGCU--GGCU- -5'
31090 5' -54.3 NC_006560.1 + 96131 0.66 0.971838
Target:  5'- gCCGACcccGCCGcCACGCc-CGCGcuucCCGAg -3'
miRNA:   3'- -GGCUG---UGGCuGUGUGuuGCGCu---GGCU- -5'
31090 5' -54.3 NC_006560.1 + 100762 0.66 0.971838
Target:  5'- aUCGGCACCgGGCGguCGGCGUcgGACCc- -3'
miRNA:   3'- -GGCUGUGG-CUGUguGUUGCG--CUGGcu -5'
31090 5' -54.3 NC_006560.1 + 103955 0.66 0.971838
Target:  5'- uUCGAUGCCcaACAC-CGACuCGACCGGg -3'
miRNA:   3'- -GGCUGUGGc-UGUGuGUUGcGCUGGCU- -5'
31090 5' -54.3 NC_006560.1 + 118333 0.66 0.971838
Target:  5'- gCGGCgGCCGGCGgccccCGCGACGaCG-CCGGg -3'
miRNA:   3'- gGCUG-UGGCUGU-----GUGUUGC-GCuGGCU- -5'
31090 5' -54.3 NC_006560.1 + 99755 0.66 0.971838
Target:  5'- aCGACGCCcgggugggGGgGCGCGuACGCcGCCGGg -3'
miRNA:   3'- gGCUGUGG--------CUgUGUGU-UGCGcUGGCU- -5'
31090 5' -54.3 NC_006560.1 + 95272 0.66 0.971838
Target:  5'- aCGGCuuCgCGGCGCGCGugcgcuuuCGCGACCu- -3'
miRNA:   3'- gGCUGu-G-GCUGUGUGUu-------GCGCUGGcu -5'
31090 5' -54.3 NC_006560.1 + 2558 0.66 0.971838
Target:  5'- aCGGCG-CGGCGCAgGucgcGCGCGGCgGGc -3'
miRNA:   3'- gGCUGUgGCUGUGUgU----UGCGCUGgCU- -5'
31090 5' -54.3 NC_006560.1 + 137622 0.66 0.971838
Target:  5'- --uGCGCCGGCG-GC-ACGCGGCCGc -3'
miRNA:   3'- ggcUGUGGCUGUgUGuUGCGCUGGCu -5'
31090 5' -54.3 NC_006560.1 + 123437 0.66 0.971838
Target:  5'- gCCGGCcCCugGGC-CACGACuGCGGCCu- -3'
miRNA:   3'- -GGCUGuGG--CUGuGUGUUG-CGCUGGcu -5'
31090 5' -54.3 NC_006560.1 + 123193 0.66 0.971838
Target:  5'- gCgGACGCCGucuCGCuGCGGCG-GGCCGu -3'
miRNA:   3'- -GgCUGUGGCu--GUG-UGUUGCgCUGGCu -5'
31090 5' -54.3 NC_006560.1 + 45076 0.66 0.97156
Target:  5'- cCCGGCGCCcGCcccCACGAaaccacuCGCGACCc- -3'
miRNA:   3'- -GGCUGUGGcUGu--GUGUU-------GCGCUGGcu -5'
31090 5' -54.3 NC_006560.1 + 3559 0.66 0.97156
Target:  5'- gCGGCGCCGACggaGCGCAccugccgcgggcuGCG-GGCCa- -3'
miRNA:   3'- gGCUGUGGCUG---UGUGU-------------UGCgCUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.