miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31091 3' -46.8 NC_006560.1 + 57278 0.66 0.999956
Target:  5'- gCGCGGccUCGGAgaGAGCGC-CGCGggGg -3'
miRNA:   3'- gGCGCU--AGCUUa-UUUGUGcGUGCuuU- -5'
31091 3' -46.8 NC_006560.1 + 73955 0.66 0.999956
Target:  5'- cCCGCcuUCGAcgc-GCGCGUGCGGGAg -3'
miRNA:   3'- -GGCGcuAGCUuauuUGUGCGUGCUUU- -5'
31091 3' -46.8 NC_006560.1 + 125162 0.66 0.999956
Target:  5'- aCGCGGUgUGGGcGGACGCGCgggccggcgGCGAAAa -3'
miRNA:   3'- gGCGCUA-GCUUaUUUGUGCG---------UGCUUU- -5'
31091 3' -46.8 NC_006560.1 + 83537 0.66 0.999956
Target:  5'- cCCGCGGagaCGuggGGACACGC-CGAc- -3'
miRNA:   3'- -GGCGCUa--GCuuaUUUGUGCGuGCUuu -5'
31091 3' -46.8 NC_006560.1 + 124847 0.66 0.999956
Target:  5'- gCGgGGUCcucGUGGACGCGCACa--- -3'
miRNA:   3'- gGCgCUAGcu-UAUUUGUGCGUGcuuu -5'
31091 3' -46.8 NC_006560.1 + 88611 0.66 0.999956
Target:  5'- gCCGCGuccUCGucc-AGCACGCGgGggGc -3'
miRNA:   3'- -GGCGCu--AGCuuauUUGUGCGUgCuuU- -5'
31091 3' -46.8 NC_006560.1 + 7110 0.66 0.999956
Target:  5'- gCCGCGAcgccauaaUCGAGcgcgggGAGCGcCGCACGu-- -3'
miRNA:   3'- -GGCGCU--------AGCUUa-----UUUGU-GCGUGCuuu -5'
31091 3' -46.8 NC_006560.1 + 83486 0.66 0.999956
Target:  5'- gCGCGcaacgcCGAGUuuGAgGCGCGCGAGGg -3'
miRNA:   3'- gGCGCua----GCUUAu-UUgUGCGUGCUUU- -5'
31091 3' -46.8 NC_006560.1 + 139578 0.66 0.999947
Target:  5'- aCCGCGGccucacguggaccagUCG-AUGGGCGCGaGCGAGc -3'
miRNA:   3'- -GGCGCU---------------AGCuUAUUUGUGCgUGCUUu -5'
31091 3' -46.8 NC_006560.1 + 43399 0.66 0.999941
Target:  5'- gCCGCGAaCGAGgucAGCGC-CGCGGc- -3'
miRNA:   3'- -GGCGCUaGCUUau-UUGUGcGUGCUuu -5'
31091 3' -46.8 NC_006560.1 + 31912 0.66 0.999941
Target:  5'- gCCGCcccggaagaagaGAgacaGAAgAAGCGCGCGCGggGg -3'
miRNA:   3'- -GGCG------------CUag--CUUaUUUGUGCGUGCuuU- -5'
31091 3' -46.8 NC_006560.1 + 92817 0.66 0.999941
Target:  5'- gCUGCaGAUCGAGgacuGGCugGCGCu--- -3'
miRNA:   3'- -GGCG-CUAGCUUau--UUGugCGUGcuuu -5'
31091 3' -46.8 NC_006560.1 + 113769 0.66 0.999941
Target:  5'- cCCGCGG-CGA--GAACACGCucACGu-- -3'
miRNA:   3'- -GGCGCUaGCUuaUUUGUGCG--UGCuuu -5'
31091 3' -46.8 NC_006560.1 + 81774 0.66 0.999941
Target:  5'- gCCGUGAUCGugccccccGGCGCccccgcgggGCGCGAAAa -3'
miRNA:   3'- -GGCGCUAGCuuau----UUGUG---------CGUGCUUU- -5'
31091 3' -46.8 NC_006560.1 + 77402 0.66 0.999941
Target:  5'- aUGCGGccCGAGgcGGCGCGCGCGc-- -3'
miRNA:   3'- gGCGCUa-GCUUauUUGUGCGUGCuuu -5'
31091 3' -46.8 NC_006560.1 + 102812 0.66 0.999941
Target:  5'- gCGCG-UCGAGUc-GCGCGCcgGCGAc- -3'
miRNA:   3'- gGCGCuAGCUUAuuUGUGCG--UGCUuu -5'
31091 3' -46.8 NC_006560.1 + 98212 0.66 0.999941
Target:  5'- gCGCGGUCGGAaaggucgucaUGGGCAuCGUggGCGggGu -3'
miRNA:   3'- gGCGCUAGCUU----------AUUUGU-GCG--UGCuuU- -5'
31091 3' -46.8 NC_006560.1 + 121003 0.66 0.999939
Target:  5'- aCGCGAgCGAcagcgcgAUGAGCG-GCACGAu- -3'
miRNA:   3'- gGCGCUaGCU-------UAUUUGUgCGUGCUuu -5'
31091 3' -46.8 NC_006560.1 + 94649 0.66 0.999934
Target:  5'- aCCGCGcccaccaAUCGAccAUGGACGCGUucgccgacaaccugACGGAGc -3'
miRNA:   3'- -GGCGC-------UAGCU--UAUUUGUGCG--------------UGCUUU- -5'
31091 3' -46.8 NC_006560.1 + 131629 0.66 0.99993
Target:  5'- gCgGCGGUCGAGcgcgcccgcgcCGCGCugGAGGg -3'
miRNA:   3'- -GgCGCUAGCUUauuu-------GUGCGugCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.