miRNA display CGI


Results 21 - 40 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31093 3' -56.9 NC_006560.1 + 21717 0.72 0.541711
Target:  5'- -----cGCGCCCCGgGGCGGagcCGGCCGg -3'
miRNA:   3'- auauucUGCGGGGCaCUGCU---GCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 30694 0.72 0.551598
Target:  5'- ----cGugGCCCCgGUGGCcccGCGGCCGc -3'
miRNA:   3'- auauuCugCGGGG-CACUGc--UGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 108498 0.72 0.551598
Target:  5'- ----cGugGCCgCCGggggGAgGGCGGCCGg -3'
miRNA:   3'- auauuCugCGG-GGCa---CUgCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 18606 0.72 0.56154
Target:  5'- --aGGGACGCCCgCGUcGGCGcGCGGCuCGu -3'
miRNA:   3'- auaUUCUGCGGG-GCA-CUGC-UGCCG-GC- -5'
31093 3' -56.9 NC_006560.1 + 77521 0.72 0.56154
Target:  5'- ----cGACGCCCag-GGCGACGGCUu -3'
miRNA:   3'- auauuCUGCGGGgcaCUGCUGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 98189 0.72 0.56154
Target:  5'- --cGAGG-GCCUCGggGACGugGGCCGc -3'
miRNA:   3'- auaUUCUgCGGGGCa-CUGCugCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 142527 0.72 0.56154
Target:  5'- --cGGGGCgggGCCCCGggccCGGCGGCCGg -3'
miRNA:   3'- auaUUCUG---CGGGGCacu-GCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 80046 0.72 0.57153
Target:  5'- ----cGGCGCCCCG-GACacccgGGCGGUCGg -3'
miRNA:   3'- auauuCUGCGGGGCaCUG-----CUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 109264 0.72 0.57153
Target:  5'- ----cGACGCCCCG-GugGugcGCGGUCGa -3'
miRNA:   3'- auauuCUGCGGGGCaCugC---UGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 42565 0.72 0.57153
Target:  5'- --gGAGGCG-CCCGccGCGGCGGCCa -3'
miRNA:   3'- auaUUCUGCgGGGCacUGCUGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 2301 0.72 0.581562
Target:  5'- aGUcGGGCGCgCCG--GCGGCGGCCGc -3'
miRNA:   3'- aUAuUCUGCGgGGCacUGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 147030 0.71 0.591629
Target:  5'- --cGGGGgGCCCCGa---GACGGCCGg -3'
miRNA:   3'- auaUUCUgCGGGGCacugCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 125010 0.71 0.591629
Target:  5'- ----cGGCGaCCCCGUGGucgccgcccacCGGCGGCUGg -3'
miRNA:   3'- auauuCUGC-GGGGCACU-----------GCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 22951 0.71 0.591629
Target:  5'- ------cCGCCCCGUGugGGCGcCCGa -3'
miRNA:   3'- auauucuGCGGGGCACugCUGCcGGC- -5'
31093 3' -56.9 NC_006560.1 + 518 0.71 0.591629
Target:  5'- ---cGGGCGCCggggGGCGGCGGCCGg -3'
miRNA:   3'- auauUCUGCGGggcaCUGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 140347 0.71 0.591629
Target:  5'- --cGGGACaGCCCCGcgGGCGuCGGCgCGg -3'
miRNA:   3'- auaUUCUG-CGGGGCa-CUGCuGCCG-GC- -5'
31093 3' -56.9 NC_006560.1 + 104987 0.71 0.601726
Target:  5'- --gGAGAUGCCCCGgcccCGcuCGGCCGg -3'
miRNA:   3'- auaUUCUGCGGGGCacu-GCu-GCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 97393 0.71 0.611845
Target:  5'- --gGGGGCGaCCCCGggGA-GGCGGCCa -3'
miRNA:   3'- auaUUCUGC-GGGGCa-CUgCUGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 52122 0.71 0.611845
Target:  5'- aUAUAAGGCGCUCCGgcgGGC--CGGCCc -3'
miRNA:   3'- -AUAUUCUGCGGGGCa--CUGcuGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 120342 0.71 0.631105
Target:  5'- --cGAGGCGugccccugcgucaCCCCGUGcAUGugGGCCa -3'
miRNA:   3'- auaUUCUGC-------------GGGGCAC-UGCugCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.