Results 1 - 20 of 214 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31093 | 3' | -56.9 | NC_006560.1 | + | 46694 | 1.08 | 0.003054 |
Target: 5'- cUAUAAGACGCCCCGUGACGACGGCCGg -3' miRNA: 3'- -AUAUUCUGCGGGGCACUGCUGCCGGC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 118318 | 0.84 | 0.125093 |
Target: 5'- ---cAGGCgGCCgCCGUGGCGGCGGCCGg -3' miRNA: 3'- auauUCUG-CGG-GGCACUGCUGCCGGC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 56857 | 0.79 | 0.24522 |
Target: 5'- --gAAGAgGCCCCG-GACGGCGGCgGu -3' miRNA: 3'- auaUUCUgCGGGGCaCUGCUGCCGgC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 82610 | 0.79 | 0.251132 |
Target: 5'- ----cGAgGCCCCG-GACGGCGGCUGg -3' miRNA: 3'- auauuCUgCGGGGCaCUGCUGCCGGC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 30550 | 0.77 | 0.295843 |
Target: 5'- --gGAGGCGCCCCGaGGCGGC-GCCGc -3' miRNA: 3'- auaUUCUGCGGGGCaCUGCUGcCGGC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 131611 | 0.77 | 0.316821 |
Target: 5'- --cAGGGCGCCgCCGgcccGGCGGCGGUCGa -3' miRNA: 3'- auaUUCUGCGG-GGCa---CUGCUGCCGGC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 7899 | 0.76 | 0.331419 |
Target: 5'- --aGAGACgccgccaucugGCCCUGgcgGACGGCGGCCGu -3' miRNA: 3'- auaUUCUG-----------CGGGGCa--CUGCUGCCGGC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 107950 | 0.75 | 0.377314 |
Target: 5'- -----aACGCCCCGacgaaggUGGCGugGGCCGg -3' miRNA: 3'- auauucUGCGGGGC-------ACUGCugCCGGC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 4033 | 0.75 | 0.378128 |
Target: 5'- ----cGGCGUCCCGgGGCGGCGGCgCGg -3' miRNA: 3'- auauuCUGCGGGGCaCUGCUGCCG-GC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 110444 | 0.75 | 0.39465 |
Target: 5'- ----cGcCGCCCUguggGUGGCGGCGGCCGa -3' miRNA: 3'- auauuCuGCGGGG----CACUGCUGCCGGC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 124246 | 0.74 | 0.42906 |
Target: 5'- ----cGACGCCCCG-GACGuCGaGCCGu -3' miRNA: 3'- auauuCUGCGGGGCaCUGCuGC-CGGC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 57597 | 0.74 | 0.434373 |
Target: 5'- --aGAGACGCCCgCGgccacccacgccGCGACGGCCGc -3' miRNA: 3'- auaUUCUGCGGG-GCac----------UGCUGCCGGC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 117986 | 0.74 | 0.437043 |
Target: 5'- ---uGGGCGCggcggcgCCCGcGGCGGCGGCCGa -3' miRNA: 3'- auauUCUGCG-------GGGCaCUGCUGCCGGC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 50204 | 0.74 | 0.437936 |
Target: 5'- ---cGGACGcCCCCG-GGCGGCGGCgGc -3' miRNA: 3'- auauUCUGC-GGGGCaCUGCUGCCGgC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 87372 | 0.74 | 0.455997 |
Target: 5'- --aAAGACGCCCCG--GCGguucauGCGGCCGu -3' miRNA: 3'- auaUUCUGCGGGGCacUGC------UGCCGGC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 133123 | 0.73 | 0.493272 |
Target: 5'- --gAAGGCGaacCCCCG-GugGGCGGCCu -3' miRNA: 3'- auaUUCUGC---GGGGCaCugCUGCCGGc -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 53871 | 0.73 | 0.50281 |
Target: 5'- ----cGACGCCCCG-GACGACGaCCc -3' miRNA: 3'- auauuCUGCGGGGCaCUGCUGCcGGc -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 45990 | 0.73 | 0.50281 |
Target: 5'- gGUAGGGCGCCCCGgccGuCGGgGGCgCGu -3' miRNA: 3'- aUAUUCUGCGGGGCa--CuGCUgCCG-GC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 18320 | 0.72 | 0.531883 |
Target: 5'- --gGGGACGCCCgucguCGUGcGCG-CGGCCGa -3' miRNA: 3'- auaUUCUGCGGG-----GCAC-UGCuGCCGGC- -5' |
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31093 | 3' | -56.9 | NC_006560.1 | + | 108219 | 0.72 | 0.531883 |
Target: 5'- --gAGGugGCUCCG-GACGAUGGCg- -3' miRNA: 3'- auaUUCugCGGGGCaCUGCUGCCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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