miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31093 3' -56.9 NC_006560.1 + 120033 0.66 0.863608
Target:  5'- --cGAG-CGCCUCGaGACGAC-GCCGc -3'
miRNA:   3'- auaUUCuGCGGGGCaCUGCUGcCGGC- -5'
31093 3' -56.9 NC_006560.1 + 55457 0.66 0.868802
Target:  5'- --cGGGGCGCCcggggcagggcccgCCGgcGACGACGGCg- -3'
miRNA:   3'- auaUUCUGCGG--------------GGCa-CUGCUGCCGgc -5'
31093 3' -56.9 NC_006560.1 + 99812 0.66 0.855245
Target:  5'- ----cGugGCCCgccaccagcugguUGUaGugGGCGGCCGg -3'
miRNA:   3'- auauuCugCGGG-------------GCA-CugCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 17891 0.66 0.856015
Target:  5'- ---cGGGCGCCCCGgcgGAgCGcuccgcGCGcGCCGg -3'
miRNA:   3'- auauUCUGCGGGGCa--CU-GC------UGC-CGGC- -5'
31093 3' -56.9 NC_006560.1 + 40868 0.66 0.863608
Target:  5'- ---cGGA-GCCCCGagccgGGCGGCGGCg- -3'
miRNA:   3'- auauUCUgCGGGGCa----CUGCUGCCGgc -5'
31093 3' -56.9 NC_006560.1 + 124012 0.66 0.863608
Target:  5'- --gAAG-CgGCCCCGgccCGACGGCCu -3'
miRNA:   3'- auaUUCuG-CGGGGCacuGCUGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 98309 0.66 0.856015
Target:  5'- cGUGGGGCugcugGUCCUGgcggGGCuGGCGGCCGc -3'
miRNA:   3'- aUAUUCUG-----CGGGGCa---CUG-CUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 91247 0.66 0.856015
Target:  5'- --cAAGcGCGCCgaCGUGGCcgaGACGGCCc -3'
miRNA:   3'- auaUUC-UGCGGg-GCACUG---CUGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 54885 0.66 0.863608
Target:  5'- --cGAGACGCCCC----CGGgGGCCa -3'
miRNA:   3'- auaUUCUGCGGGGcacuGCUgCCGGc -5'
31093 3' -56.9 NC_006560.1 + 116529 0.66 0.856015
Target:  5'- --gGAGGCggGCggCGaUGGCGACGGCCGa -3'
miRNA:   3'- auaUUCUG--CGggGC-ACUGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 129626 0.66 0.856015
Target:  5'- ---cGGcCGCCCCGccGGCGG-GGCCGu -3'
miRNA:   3'- auauUCuGCGGGGCa-CUGCUgCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 148739 0.66 0.863608
Target:  5'- cAUAucccCGCCCCGUuGgGGCGGCCc -3'
miRNA:   3'- aUAUucu-GCGGGGCAcUgCUGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 10496 0.66 0.870996
Target:  5'- ---cGGGgGCCCCGUcGgGuCGGCCGu -3'
miRNA:   3'- auauUCUgCGGGGCAcUgCuGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 115548 0.66 0.866588
Target:  5'- --cGGGGCGCgccucccgCUCGUGGCGaacguggagcagcugGCGGCCGu -3'
miRNA:   3'- auaUUCUGCG--------GGGCACUGC---------------UGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 25731 0.66 0.852144
Target:  5'- --gGAGACGCCCCGgccccgccacagacaGGCGcgaagcccgcagagcGCGcGCCGg -3'
miRNA:   3'- auaUUCUGCGGGGCa--------------CUGC---------------UGC-CGGC- -5'
31093 3' -56.9 NC_006560.1 + 21248 0.66 0.860595
Target:  5'- --gGGGACGCCgCGcaggcgcggugagGGCGGCGGCgGc -3'
miRNA:   3'- auaUUCUGCGGgGCa------------CUGCUGCCGgC- -5'
31093 3' -56.9 NC_006560.1 + 78054 0.66 0.863608
Target:  5'- -------gGCCCCG-GAgcUGGCGGCCGg -3'
miRNA:   3'- auauucugCGGGGCaCU--GCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 45470 0.66 0.856015
Target:  5'- --cAGGACGCCCCGcGaguucaGCGACGaGCg- -3'
miRNA:   3'- auaUUCUGCGGGGCaC------UGCUGC-CGgc -5'
31093 3' -56.9 NC_006560.1 + 112530 0.66 0.891878
Target:  5'- cGUGGGGCGgCaCGUGcuggcgcccGCGACGGUCGc -3'
miRNA:   3'- aUAUUCUGCgGgGCAC---------UGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 97251 0.66 0.863608
Target:  5'- --cGGGACGCa-CGUGAagGugGGCCa -3'
miRNA:   3'- auaUUCUGCGggGCACUg-CugCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.