miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31093 3' -56.9 NC_006560.1 + 112530 0.66 0.891878
Target:  5'- cGUGGGGCGgCaCGUGcuggcgcccGCGACGGUCGc -3'
miRNA:   3'- aUAUUCUGCgGgGCAC---------UGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 117986 0.74 0.437043
Target:  5'- ---uGGGCGCggcggcgCCCGcGGCGGCGGCCGa -3'
miRNA:   3'- auauUCUGCG-------GGGCaCUGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 50204 0.74 0.437936
Target:  5'- ---cGGACGcCCCCG-GGCGGCGGCgGc -3'
miRNA:   3'- auauUCUGC-GGGGCaCUGCUGCCGgC- -5'
31093 3' -56.9 NC_006560.1 + 87372 0.74 0.455997
Target:  5'- --aAAGACGCCCCG--GCGguucauGCGGCCGu -3'
miRNA:   3'- auaUUCUGCGGGGCacUGC------UGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 133123 0.73 0.493272
Target:  5'- --gAAGGCGaacCCCCG-GugGGCGGCCu -3'
miRNA:   3'- auaUUCUGC---GGGGCaCugCUGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 45990 0.73 0.50281
Target:  5'- gGUAGGGCGCCCCGgccGuCGGgGGCgCGu -3'
miRNA:   3'- aUAUUCUGCGGGGCa--CuGCUgCCG-GC- -5'
31093 3' -56.9 NC_006560.1 + 53871 0.73 0.50281
Target:  5'- ----cGACGCCCCG-GACGACGaCCc -3'
miRNA:   3'- auauuCUGCGGGGCaCUGCUGCcGGc -5'
31093 3' -56.9 NC_006560.1 + 18320 0.72 0.531883
Target:  5'- --gGGGACGCCCgucguCGUGcGCG-CGGCCGa -3'
miRNA:   3'- auaUUCUGCGGG-----GCAC-UGCuGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 108219 0.72 0.531883
Target:  5'- --gAGGugGCUCCG-GACGAUGGCg- -3'
miRNA:   3'- auaUUCugCGGGGCaCUGCUGCCGgc -5'
31093 3' -56.9 NC_006560.1 + 57597 0.74 0.434373
Target:  5'- --aGAGACGCCCgCGgccacccacgccGCGACGGCCGc -3'
miRNA:   3'- auaUUCUGCGGG-GCac----------UGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 124246 0.74 0.42906
Target:  5'- ----cGACGCCCCG-GACGuCGaGCCGu -3'
miRNA:   3'- auauuCUGCGGGGCaCUGCuGC-CGGC- -5'
31093 3' -56.9 NC_006560.1 + 110444 0.75 0.39465
Target:  5'- ----cGcCGCCCUguggGUGGCGGCGGCCGa -3'
miRNA:   3'- auauuCuGCGGGG----CACUGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 118318 0.84 0.125093
Target:  5'- ---cAGGCgGCCgCCGUGGCGGCGGCCGg -3'
miRNA:   3'- auauUCUG-CGG-GGCACUGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 56857 0.79 0.24522
Target:  5'- --gAAGAgGCCCCG-GACGGCGGCgGu -3'
miRNA:   3'- auaUUCUgCGGGGCaCUGCUGCCGgC- -5'
31093 3' -56.9 NC_006560.1 + 82610 0.79 0.251132
Target:  5'- ----cGAgGCCCCG-GACGGCGGCUGg -3'
miRNA:   3'- auauuCUgCGGGGCaCUGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 30550 0.77 0.295843
Target:  5'- --gGAGGCGCCCCGaGGCGGC-GCCGc -3'
miRNA:   3'- auaUUCUGCGGGGCaCUGCUGcCGGC- -5'
31093 3' -56.9 NC_006560.1 + 131611 0.77 0.316821
Target:  5'- --cAGGGCGCCgCCGgcccGGCGGCGGUCGa -3'
miRNA:   3'- auaUUCUGCGG-GGCa---CUGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 7899 0.76 0.331419
Target:  5'- --aGAGACgccgccaucugGCCCUGgcgGACGGCGGCCGu -3'
miRNA:   3'- auaUUCUG-----------CGGGGCa--CUGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 107950 0.75 0.377314
Target:  5'- -----aACGCCCCGacgaaggUGGCGugGGCCGg -3'
miRNA:   3'- auauucUGCGGGGC-------ACUGCugCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 4033 0.75 0.378128
Target:  5'- ----cGGCGUCCCGgGGCGGCGGCgCGg -3'
miRNA:   3'- auauuCUGCGGGGCaCUGCUGCCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.