miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31093 3' -56.9 NC_006560.1 + 99 0.67 0.832069
Target:  5'- -----cGCGCCCCGcccccgcGGCcGCGGCCGg -3'
miRNA:   3'- auauucUGCGGGGCa------CUGcUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 518 0.71 0.591629
Target:  5'- ---cGGGCGCCggggGGCGGCGGCCGg -3'
miRNA:   3'- auauUCUGCGGggcaCUGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 2301 0.72 0.581562
Target:  5'- aGUcGGGCGCgCCG--GCGGCGGCCGc -3'
miRNA:   3'- aUAuUCUGCGgGGCacUGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 2688 0.69 0.732183
Target:  5'- ----cGGCGUCCaCGacgacgaGGCGGCGGCCGg -3'
miRNA:   3'- auauuCUGCGGG-GCa------CUGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 3048 0.69 0.711581
Target:  5'- --cGAGGCGCggagcggCCCGagGGCG-CGGCCGg -3'
miRNA:   3'- auaUUCUGCG-------GGGCa-CUGCuGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 4033 0.75 0.378128
Target:  5'- ----cGGCGUCCCGgGGCGGCGGCgCGg -3'
miRNA:   3'- auauuCUGCGGGGCaCUGCUGCCG-GC- -5'
31093 3' -56.9 NC_006560.1 + 4534 0.7 0.662512
Target:  5'- --aGAGcacGCGCCCCGggGGCGGgGGCuCGg -3'
miRNA:   3'- auaUUC---UGCGGGGCa-CUGCUgCCG-GC- -5'
31093 3' -56.9 NC_006560.1 + 4667 0.7 0.652394
Target:  5'- cGUGAaGCGgCCCGUGGCGucgcgccCGGCCa -3'
miRNA:   3'- aUAUUcUGCgGGGCACUGCu------GCCGGc -5'
31093 3' -56.9 NC_006560.1 + 4738 0.7 0.682666
Target:  5'- ----cGACG-CCCGUcucGGCGGCGGCCc -3'
miRNA:   3'- auauuCUGCgGGGCA---CUGCUGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 5173 0.67 0.840239
Target:  5'- --gGGGGCggGCCgCGgcGACGGCGGCCc -3'
miRNA:   3'- auaUUCUG--CGGgGCa-CUGCUGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 5304 0.67 0.832069
Target:  5'- cGUcGGcCGCCgCGUGcgacgGCGGCGGCCc -3'
miRNA:   3'- aUAuUCuGCGGgGCAC-----UGCUGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 5666 0.69 0.722414
Target:  5'- ------cCGCCCCGgGGCGcggggGCGGCCGg -3'
miRNA:   3'- auauucuGCGGGGCaCUGC-----UGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 7489 0.66 0.870996
Target:  5'- ----cGAC-CCCCGggggUGAgGACGGCCc -3'
miRNA:   3'- auauuCUGcGGGGC----ACUgCUGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 7899 0.76 0.331419
Target:  5'- --aGAGACgccgccaucugGCCCUGgcgGACGGCGGCCGu -3'
miRNA:   3'- auaUUCUG-----------CGGGGCa--CUGCUGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 8638 0.67 0.82372
Target:  5'- --gAGGACGaaCCCCGcGACGaagccgGCGGCCc -3'
miRNA:   3'- auaUUCUGC--GGGGCaCUGC------UGCCGGc -5'
31093 3' -56.9 NC_006560.1 + 9170 0.68 0.770317
Target:  5'- cGUcGGGCGCCUCGggcccGCGACGGgCGu -3'
miRNA:   3'- aUAuUCUGCGGGGCac---UGCUGCCgGC- -5'
31093 3' -56.9 NC_006560.1 + 9580 0.68 0.77957
Target:  5'- --gAAGACGCCCaCGaGGCG-CGGCg- -3'
miRNA:   3'- auaUUCUGCGGG-GCaCUGCuGCCGgc -5'
31093 3' -56.9 NC_006560.1 + 10496 0.66 0.870996
Target:  5'- ---cGGGgGCCCCGUcGgGuCGGCCGu -3'
miRNA:   3'- auauUCUgCGGGGCAcUgCuGCCGGC- -5'
31093 3' -56.9 NC_006560.1 + 12696 0.66 0.878174
Target:  5'- ----uGGCG-CCCGUGugGuCGGCgGg -3'
miRNA:   3'- auauuCUGCgGGGCACugCuGCCGgC- -5'
31093 3' -56.9 NC_006560.1 + 14110 0.66 0.870996
Target:  5'- --gAGGACGgcCCCCGcGcccAUGGCGGCCa -3'
miRNA:   3'- auaUUCUGC--GGGGCaC---UGCUGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.