miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31093 5' -65.8 NC_006560.1 + 30663 0.65 0.504986
Target:  5'- -cCCGCCGCCccccggccgucucgGGGCCCcccguggccccGGUgGCCc-- -3'
miRNA:   3'- gaGGCGGCGG--------------CCCGGG-----------CCAgCGGaag -5'
31093 5' -65.8 NC_006560.1 + 146905 0.65 0.50408
Target:  5'- ---gGCCGCCuGGGCCCGGgcuugacuccggGCCUg- -3'
miRNA:   3'- gaggCGGCGG-CCCGGGCCag----------CGGAag -5'
31093 5' -65.8 NC_006560.1 + 110754 0.66 0.454578
Target:  5'- -aCCGCCuaCGGGCaCgCGGcCGCCa-- -3'
miRNA:   3'- gaGGCGGcgGCCCG-G-GCCaGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 71844 0.66 0.463229
Target:  5'- uCUUCGCgggGCCuGGGCCCGG-CgGCCgcugUCg -3'
miRNA:   3'- -GAGGCGg--CGG-CCCGGGCCaG-CGGa---AG- -5'
31093 5' -65.8 NC_006560.1 + 116864 0.66 0.460625
Target:  5'- gCUCC-CCGgCGGGCuuggugaggacgggCCGGUCGUCg-- -3'
miRNA:   3'- -GAGGcGGCgGCCCG--------------GGCCAGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 20015 0.66 0.454578
Target:  5'- gUCCGgguggugccCCuCCGaGGCCCGcGUCGCCcgUCg -3'
miRNA:   3'- gAGGC---------GGcGGC-CCGGGC-CAGCGGa-AG- -5'
31093 5' -65.8 NC_006560.1 + 21732 0.66 0.463229
Target:  5'- ---aGCCgGCCGGGCgCCGcccGUCGCCg-- -3'
miRNA:   3'- gaggCGG-CGGCCCG-GGC---CAGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 131615 0.66 0.463229
Target:  5'- --gCGCCGCC-GGCCCGG-CGgCggUCg -3'
miRNA:   3'- gagGCGGCGGcCCGGGCCaGCgGa-AG- -5'
31093 5' -65.8 NC_006560.1 + 82875 0.66 0.471089
Target:  5'- cCUUCGUCGCCGcGGCCgccgagaCGuUCGCCcUCg -3'
miRNA:   3'- -GAGGCGGCGGC-CCGG-------GCcAGCGGaAG- -5'
31093 5' -65.8 NC_006560.1 + 110366 0.66 0.454578
Target:  5'- cCUCgugGCCGCCGGGCa-GGcgCGCCa-- -3'
miRNA:   3'- -GAGg--CGGCGGCCCGggCCa-GCGGaag -5'
31093 5' -65.8 NC_006560.1 + 6115 0.66 0.469336
Target:  5'- -gCCGCCGCCcucaccgcgccugcGcGGCguccCCGGUUGCCUa- -3'
miRNA:   3'- gaGGCGGCGG--------------C-CCG----GGCCAGCGGAag -5'
31093 5' -65.8 NC_006560.1 + 107512 0.66 0.46236
Target:  5'- -aUCGCCGCgGcccucgcgggccuGGCCCGcGUCGCCc-- -3'
miRNA:   3'- gaGGCGGCGgC-------------CCGGGC-CAGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 65930 0.66 0.463229
Target:  5'- -gCCGCCcCCGcaGGUCCGGcCGCCa-- -3'
miRNA:   3'- gaGGCGGcGGC--CCGGGCCaGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 133514 0.66 0.463229
Target:  5'- --gCGCCgGCCGGGgUCGG-CGgCUUCg -3'
miRNA:   3'- gagGCGG-CGGCCCgGGCCaGCgGAAG- -5'
31093 5' -65.8 NC_006560.1 + 144975 0.66 0.468461
Target:  5'- -cCCGCCcccccgacggaccCCGGGCCCGcG-CGCCcUCg -3'
miRNA:   3'- gaGGCGGc------------GGCCCGGGC-CaGCGGaAG- -5'
31093 5' -65.8 NC_006560.1 + 87156 0.66 0.454578
Target:  5'- --gCGCUGCgCGGGCCCGG-CGgCg-- -3'
miRNA:   3'- gagGCGGCG-GCCCGGGCCaGCgGaag -5'
31093 5' -65.8 NC_006560.1 + 105654 0.66 0.463229
Target:  5'- -cCCGUCGaCCGGGacCCCGGg-GCCUa- -3'
miRNA:   3'- gaGGCGGC-GGCCC--GGGCCagCGGAag -5'
31093 5' -65.8 NC_006560.1 + 83305 0.66 0.454578
Target:  5'- gUCCGCCacccgcGCCcuccucGGGaCCCuGGUCGCCg-- -3'
miRNA:   3'- gAGGCGG------CGG------CCC-GGG-CCAGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 1934 0.66 0.471966
Target:  5'- -cUCGCCGuCCGGGUCCcaguccggGGUCGCg--- -3'
miRNA:   3'- gaGGCGGC-GGCCCGGG--------CCAGCGgaag -5'
31093 5' -65.8 NC_006560.1 + 94756 0.66 0.454578
Target:  5'- uUCgGCCGCCGGGCCgagcacuuUGaGcgCGCgUUCg -3'
miRNA:   3'- gAGgCGGCGGCCCGG--------GC-Ca-GCGgAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.