miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31093 5' -65.8 NC_006560.1 + 46728 1.09 0.000414
Target:  5'- aCUCCGCCGCCGGGCCCGGUCGCCUUCg -3'
miRNA:   3'- -GAGGCGGCGGCCCGGGCCAGCGGAAG- -5'
31093 5' -65.8 NC_006560.1 + 79298 0.84 0.02699
Target:  5'- -gUCGCCGCCGGGCCCGGcCGCCc-- -3'
miRNA:   3'- gaGGCGGCGGCCCGGGCCaGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 60274 0.78 0.074588
Target:  5'- -gCCGCCcCCGGGCCCGG-CGCCa-- -3'
miRNA:   3'- gaGGCGGcGGCCCGGGCCaGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 35169 0.78 0.076478
Target:  5'- -cCCgGCCGCCGGGCCCGGggcccCGCCc-- -3'
miRNA:   3'- gaGG-CGGCGGCCCGGGCCa----GCGGaag -5'
31093 5' -65.8 NC_006560.1 + 54090 0.77 0.100524
Target:  5'- -gCCGCCGCCGGGCCCGa--GCCc-- -3'
miRNA:   3'- gaGGCGGCGGCCCGGGCcagCGGaag -5'
31093 5' -65.8 NC_006560.1 + 133665 0.76 0.116491
Target:  5'- --aCGCCGCUGGGCCCGGUgaugagcgCGCCc-- -3'
miRNA:   3'- gagGCGGCGGCCCGGGCCA--------GCGGaag -5'
31093 5' -65.8 NC_006560.1 + 131179 0.75 0.131574
Target:  5'- -gCCGCCGCgGGggcGCCCGGcCGCCUg- -3'
miRNA:   3'- gaGGCGGCGgCC---CGGGCCaGCGGAag -5'
31093 5' -65.8 NC_006560.1 + 22187 0.75 0.138097
Target:  5'- -cCCGCCGUCGGGgCCGccGUCGCCg-- -3'
miRNA:   3'- gaGGCGGCGGCCCgGGC--CAGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 24300 0.74 0.14844
Target:  5'- -cCCGCCcgaGCCGGGCuCCGGccgCGCCcUCg -3'
miRNA:   3'- gaGGCGG---CGGCCCG-GGCCa--GCGGaAG- -5'
31093 5' -65.8 NC_006560.1 + 100026 0.74 0.155722
Target:  5'- -cCCGCgGUCGGGCCgCGGcUCGCCg-- -3'
miRNA:   3'- gaGGCGgCGGCCCGG-GCC-AGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 108682 0.74 0.163326
Target:  5'- -cCCGCCGCCGGGCC--GUCGUCg-- -3'
miRNA:   3'- gaGGCGGCGGCCCGGgcCAGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 19650 0.74 0.163326
Target:  5'- -gUCGUCGCCGGGCCCGaggcggcuGUCGUCgUCg -3'
miRNA:   3'- gaGGCGGCGGCCCGGGC--------CAGCGGaAG- -5'
31093 5' -65.8 NC_006560.1 + 118838 0.73 0.171263
Target:  5'- gUUCGaCGCCGcGGCCgaGGUCGCCUUUg -3'
miRNA:   3'- gAGGCgGCGGC-CCGGg-CCAGCGGAAG- -5'
31093 5' -65.8 NC_006560.1 + 50261 0.73 0.179542
Target:  5'- cCUCCggGCgGCCGGGCUCGGcgCGCCc-- -3'
miRNA:   3'- -GAGG--CGgCGGCCCGGGCCa-GCGGaag -5'
31093 5' -65.8 NC_006560.1 + 150308 0.73 0.183813
Target:  5'- -gCCGCCGCgggaGGGCCCGGccccccgCGCCg-- -3'
miRNA:   3'- gaGGCGGCGg---CCCGGGCCa------GCGGaag -5'
31093 5' -65.8 NC_006560.1 + 106000 0.73 0.188174
Target:  5'- -cCCGCCGCCGGGCaagCGGUacCGCacgUUCg -3'
miRNA:   3'- gaGGCGGCGGCCCGg--GCCA--GCGg--AAG- -5'
31093 5' -65.8 NC_006560.1 + 139057 0.72 0.19717
Target:  5'- gUCCcgGCCcguGCCGGGCCCGGgggcgCGCCc-- -3'
miRNA:   3'- gAGG--CGG---CGGCCCGGGCCa----GCGGaag -5'
31093 5' -65.8 NC_006560.1 + 85487 0.72 0.19717
Target:  5'- cCUgCGCCGCUuGGGCUCGGggUCGCCg-- -3'
miRNA:   3'- -GAgGCGGCGG-CCCGGGCC--AGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 54857 0.72 0.206538
Target:  5'- -gCCGCCGCCGGgaggcGCCCGGgaGCCg-- -3'
miRNA:   3'- gaGGCGGCGGCC-----CGGGCCagCGGaag -5'
31093 5' -65.8 NC_006560.1 + 90298 0.72 0.206538
Target:  5'- -gCCGUCGUgGGGCCCG-UCGCCg-- -3'
miRNA:   3'- gaGGCGGCGgCCCGGGCcAGCGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.