miRNA display CGI


Results 1 - 20 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31093 5' -65.8 NC_006560.1 + 214 0.69 0.302427
Target:  5'- -gCCGCCGCgggaGGGCCCGGccCGCg--- -3'
miRNA:   3'- gaGGCGGCGg---CCCGGGCCa-GCGgaag -5'
31093 5' -65.8 NC_006560.1 + 1032 0.7 0.271079
Target:  5'- uCUCCGCCcucCCGGGuaCCUGGcgcUCGUCUUCu -3'
miRNA:   3'- -GAGGCGGc--GGCCC--GGGCC---AGCGGAAG- -5'
31093 5' -65.8 NC_006560.1 + 1287 0.68 0.380951
Target:  5'- -cCCGCCgcGCCGGgccGCCCGGguucCGCCcgCa -3'
miRNA:   3'- gaGGCGG--CGGCC---CGGGCCa---GCGGaaG- -5'
31093 5' -65.8 NC_006560.1 + 1934 0.66 0.471966
Target:  5'- -cUCGCCGuCCGGGUCCcaguccggGGUCGCg--- -3'
miRNA:   3'- gaGGCGGC-GGCCCGGG--------CCAGCGgaag -5'
31093 5' -65.8 NC_006560.1 + 3276 0.69 0.315726
Target:  5'- -gCCGCCGCgGGGgUCGGgccCGCCg-- -3'
miRNA:   3'- gaGGCGGCGgCCCgGGCCa--GCGGaag -5'
31093 5' -65.8 NC_006560.1 + 3656 0.68 0.35824
Target:  5'- cCUCggCGCCGCCGGGgaCgcggaGGUCGCCg-- -3'
miRNA:   3'- -GAG--GCGGCGGCCCg-Gg----CCAGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 3799 0.66 0.489685
Target:  5'- -gCCGCCaGcCCGGGCacggcggcgaGGUCGCCg-- -3'
miRNA:   3'- gaGGCGG-C-GGCCCGgg--------CCAGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 3926 0.71 0.231652
Target:  5'- cCUCCGCCGCgggggCGGcGCCgCGGUCGgCggCg -3'
miRNA:   3'- -GAGGCGGCG-----GCC-CGG-GCCAGCgGaaG- -5'
31093 5' -65.8 NC_006560.1 + 4558 0.69 0.309022
Target:  5'- gCUCgGCC-CCGGGCCagGGcUCGCCg-- -3'
miRNA:   3'- -GAGgCGGcGGCCCGGg-CC-AGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 5142 0.67 0.404604
Target:  5'- aCUCgCGgCGCgGGGCCCGGgccgggGCCg-- -3'
miRNA:   3'- -GAG-GCgGCGgCCCGGGCCag----CGGaag -5'
31093 5' -65.8 NC_006560.1 + 5359 0.69 0.309022
Target:  5'- -gCCGUCGuCCGGGUCCGGcgagcccgCGCCg-- -3'
miRNA:   3'- gaGGCGGC-GGCCCGGGCCa-------GCGGaag -5'
31093 5' -65.8 NC_006560.1 + 5453 0.69 0.336494
Target:  5'- cCUUCGCCGCCcggGGGCgCCGGggcuccgagCGCggUCg -3'
miRNA:   3'- -GAGGCGGCGG---CCCG-GGCCa--------GCGgaAG- -5'
31093 5' -65.8 NC_006560.1 + 5663 0.66 0.486116
Target:  5'- gCUCCGCC-CCGGGgCgCGGgggcggccggcggCGCCgcccgUCg -3'
miRNA:   3'- -GAGGCGGcGGCCCgG-GCCa------------GCGGa----AG- -5'
31093 5' -65.8 NC_006560.1 + 6115 0.66 0.469336
Target:  5'- -gCCGCCGCCcucaccgcgccugcGcGGCguccCCGGUUGCCUa- -3'
miRNA:   3'- gaGGCGGCGG--------------C-CCG----GGCCAGCGGAag -5'
31093 5' -65.8 NC_006560.1 + 6333 0.66 0.489685
Target:  5'- --aCGCCGCgCGGGCgccccgccCCGGccCGcCCUUCg -3'
miRNA:   3'- gagGCGGCG-GCCCG--------GGCCa-GC-GGAAG- -5'
31093 5' -65.8 NC_006560.1 + 6418 0.66 0.489685
Target:  5'- -gCCGCgGCC-GGCCCGccgcacaacgccGUCGCCg-- -3'
miRNA:   3'- gaGGCGgCGGcCCGGGC------------CAGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 9415 0.68 0.388733
Target:  5'- -gCCGCCGUCGGaGCUCaGGUCGgCg-- -3'
miRNA:   3'- gaGGCGGCGGCC-CGGG-CCAGCgGaag -5'
31093 5' -65.8 NC_006560.1 + 10475 0.68 0.35824
Target:  5'- --aCGCCGCCucgGGGCCCGGggcggggGCCccgUCg -3'
miRNA:   3'- gagGCGGCGG---CCCGGGCCag-----CGGa--AG- -5'
31093 5' -65.8 NC_006560.1 + 10793 0.68 0.388733
Target:  5'- -gCCcCCGCgGGGCCCGGgcgagaGCCaUCc -3'
miRNA:   3'- gaGGcGGCGgCCCGGGCCag----CGGaAG- -5'
31093 5' -65.8 NC_006560.1 + 10920 0.66 0.471966
Target:  5'- -gCCGCCGCCGG---CGG-CGCCUUa -3'
miRNA:   3'- gaGGCGGCGGCCcggGCCaGCGGAAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.