Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31094 | 3' | -54.7 | NC_006560.1 | + | 16664 | 0.65 | 0.965076 |
Target: 5'- cCGGUGgcGGUacugcgaGACGaggcgGGAgCCCGCGu -3' miRNA: 3'- -GCCACauCCA-------CUGCa----UCUaGGGCGCc -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 98739 | 0.66 | 0.962425 |
Target: 5'- gCGGUGUGaucGGUGACGgaucguuugugcgucGGAagCgCGCGGg -3' miRNA: 3'- -GCCACAU---CCACUGCa--------------UCUagG-GCGCC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 43817 | 0.66 | 0.962084 |
Target: 5'- gGGUGUGGaUGGCGaAGGUggccUCCGCGu -3' miRNA: 3'- gCCACAUCcACUGCaUCUA----GGGCGCc -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 72353 | 0.66 | 0.962084 |
Target: 5'- gGGUGUGGG--GCGcGGccCUCGCGGg -3' miRNA: 3'- gCCACAUCCacUGCaUCuaGGGCGCC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 39592 | 0.66 | 0.958555 |
Target: 5'- uCGGUGgcGGgcGCGccGG-CCCGCGGa -3' miRNA: 3'- -GCCACauCCacUGCauCUaGGGCGCC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 147911 | 0.66 | 0.954807 |
Target: 5'- gCGG-GgcGGgGGCGggggAGAgggggCCCGCGGc -3' miRNA: 3'- -GCCaCauCCaCUGCa---UCUa----GGGCGCC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 33817 | 0.66 | 0.950836 |
Target: 5'- aCGGggGgcggGGGUcGGCGgGGGUCggCCGCGGg -3' miRNA: 3'- -GCCa-Ca---UCCA-CUGCaUCUAG--GGCGCC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 47833 | 0.66 | 0.950836 |
Target: 5'- gGGUGgaUGGG-GGCGgggaggucacgGGGUCCgGCGGc -3' miRNA: 3'- gCCAC--AUCCaCUGCa----------UCUAGGgCGCC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 66437 | 0.66 | 0.950836 |
Target: 5'- -cGUGUGGGaaGACGUGGGUgugaaccauggCCCGCaGGc -3' miRNA: 3'- gcCACAUCCa-CUGCAUCUA-----------GGGCG-CC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 85740 | 0.66 | 0.950427 |
Target: 5'- aGGUGgggcAGGcgcuuguUGGCGUAGG-CgCGCGGg -3' miRNA: 3'- gCCACa---UCC-------ACUGCAUCUaGgGCGCC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 109360 | 0.67 | 0.942212 |
Target: 5'- uCGGUGUGGGcgGAgaUGGAaCCCcggGCGGg -3' miRNA: 3'- -GCCACAUCCa-CUgcAUCUaGGG---CGCC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 66516 | 0.67 | 0.937554 |
Target: 5'- cCGGUaguuGgcGGUGACGUGcGUCCgGaCGGc -3' miRNA: 3'- -GCCA----CauCCACUGCAUcUAGGgC-GCC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 71643 | 0.67 | 0.937554 |
Target: 5'- uGGUGgAGGgcggGGCGUGGA---CGCGGg -3' miRNA: 3'- gCCACaUCCa---CUGCAUCUaggGCGCC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 110548 | 0.67 | 0.936111 |
Target: 5'- aGGgGUGGGUGGgGccagcgGGGuauauaaaccgcgcUCCCGCGGa -3' miRNA: 3'- gCCaCAUCCACUgCa-----UCU--------------AGGGCGCC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 27841 | 0.67 | 0.922175 |
Target: 5'- gGGUGccggGGGUGcCGgGGGUcucccgCCCGCGGc -3' miRNA: 3'- gCCACa---UCCACuGCaUCUA------GGGCGCC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 100450 | 0.68 | 0.91075 |
Target: 5'- aGGUaGUuGGUGACGaggUAGAgcaggcgcUCCuCGCGGg -3' miRNA: 3'- gCCA-CAuCCACUGC---AUCU--------AGG-GCGCC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 28049 | 0.68 | 0.91075 |
Target: 5'- uCGGUGgucuugGGGUcgGugGgcGGUCCUGgGGu -3' miRNA: 3'- -GCCACa-----UCCA--CugCauCUAGGGCgCC- -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 139225 | 0.68 | 0.904688 |
Target: 5'- uGGUGUcgaAGGcGACGUggucgGGGUCCgGCGc -3' miRNA: 3'- gCCACA---UCCaCUGCA-----UCUAGGgCGCc -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 76365 | 0.68 | 0.891878 |
Target: 5'- --cUGcGGGUGGCGgcGAUCCCgGCGa -3' miRNA: 3'- gccACaUCCACUGCauCUAGGG-CGCc -5' |
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31094 | 3' | -54.7 | NC_006560.1 | + | 54354 | 0.69 | 0.863608 |
Target: 5'- cCGGgugggGUGGGUGGgGUGGGgaagaCCGgGGg -3' miRNA: 3'- -GCCa----CAUCCACUgCAUCUag---GGCgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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