miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31103 3' -59.3 NC_006560.1 + 35533 0.66 0.773102
Target:  5'- uUAGGGcccgcgcGGGGCGGGGGGGccggcaauuagcgcGGAGGAGc -3'
miRNA:   3'- -GUCUCcu-----CCUCGUCCUCCU--------------CCUCCUC- -5'
31103 3' -59.3 NC_006560.1 + 137168 0.66 0.766619
Target:  5'- gGGGcGGAGG-GCGcGGAGGGcgcGGAGGGc -3'
miRNA:   3'- gUCU-CCUCCuCGU-CCUCCU---CCUCCUc -5'
31103 3' -59.3 NC_006560.1 + 57008 0.66 0.766619
Target:  5'- -cGAGGuGGAucgcgaGCAGGAGGcAGGcgugggcgcccAGGAGc -3'
miRNA:   3'- guCUCCuCCU------CGUCCUCC-UCC-----------UCCUC- -5'
31103 3' -59.3 NC_006560.1 + 56422 0.66 0.766619
Target:  5'- -cGGGGAGGGuGCGGuugccccgcgccGGGGucGAGGAGg -3'
miRNA:   3'- guCUCCUCCU-CGUC------------CUCCucCUCCUC- -5'
31103 3' -59.3 NC_006560.1 + 25931 0.66 0.757259
Target:  5'- gCGGAGGcgugcGGuGCcGGAGGGGGGcGAGg -3'
miRNA:   3'- -GUCUCCu----CCuCGuCCUCCUCCUcCUC- -5'
31103 3' -59.3 NC_006560.1 + 40056 0.66 0.757259
Target:  5'- ---cGGcGGGGCGGGGacGGGGAGGGGa -3'
miRNA:   3'- gucuCCuCCUCGUCCUc-CUCCUCCUC- -5'
31103 3' -59.3 NC_006560.1 + 8858 0.66 0.756316
Target:  5'- uCGGGcGGGGucggucuGGGguGGGGGAGGcGGGGGg -3'
miRNA:   3'- -GUCU-CCUC-------CUCguCCUCCUCC-UCCUC- -5'
31103 3' -59.3 NC_006560.1 + 140398 0.66 0.738225
Target:  5'- cCGGGGGGGGuucagcgccggGGaCGGGAGGGcucGGuGGAGu -3'
miRNA:   3'- -GUCUCCUCC-----------UC-GUCCUCCU---CCuCCUC- -5'
31103 3' -59.3 NC_006560.1 + 71475 0.66 0.738225
Target:  5'- -cGAGGGGGGaucGCGGGAucguggucaccGGGGcGAGGAa -3'
miRNA:   3'- guCUCCUCCU---CGUCCU-----------CCUC-CUCCUc -5'
31103 3' -59.3 NC_006560.1 + 6704 0.66 0.72857
Target:  5'- cCGGGGGcucGGGGGCucGGGGGGAccGGGGGc- -3'
miRNA:   3'- -GUCUCC---UCCUCG--UCCUCCU--CCUCCuc -5'
31103 3' -59.3 NC_006560.1 + 99301 0.67 0.718833
Target:  5'- uCGGGGGAGGuGguGGGGcGcGGGGGc- -3'
miRNA:   3'- -GUCUCCUCCuCguCCUC-CuCCUCCuc -5'
31103 3' -59.3 NC_006560.1 + 122277 0.67 0.718833
Target:  5'- --cAGGAGGAGCAGcucGAGGAGGc- -3'
miRNA:   3'- gucUCCUCCUCGUCcucCUCCUCCuc -5'
31103 3' -59.3 NC_006560.1 + 147782 0.67 0.718833
Target:  5'- gCAGAGGGGGcAGCuguugcgcaugGGGAGccaggucuuGAGGcAGGGGa -3'
miRNA:   3'- -GUCUCCUCC-UCG-----------UCCUC---------CUCC-UCCUC- -5'
31103 3' -59.3 NC_006560.1 + 9639 0.67 0.718833
Target:  5'- aAGGGGuGGGuGCGGccGGAGGGGGGc -3'
miRNA:   3'- gUCUCCuCCU-CGUCcuCCUCCUCCUc -5'
31103 3' -59.3 NC_006560.1 + 71196 0.67 0.703109
Target:  5'- gGGAGGAGuccgcccGGCcccggaacgaccccgAGGAGGAcgaGGAGGAGa -3'
miRNA:   3'- gUCUCCUCc------UCG---------------UCCUCCU---CCUCCUC- -5'
31103 3' -59.3 NC_006560.1 + 32385 0.67 0.699153
Target:  5'- gCAGAGGgccccccgcGGGGGC-GGAGGGuGGGGGc- -3'
miRNA:   3'- -GUCUCC---------UCCUCGuCCUCCU-CCUCCuc -5'
31103 3' -59.3 NC_006560.1 + 96166 0.67 0.699153
Target:  5'- -cGAGGAGGucccGGacgAGGAcGGGGAGGGGg -3'
miRNA:   3'- guCUCCUCC----UCg--UCCUcCUCCUCCUC- -5'
31103 3' -59.3 NC_006560.1 + 11591 0.67 0.688232
Target:  5'- uCGGGGGucgcGGGGUuGGGGGAgaccggcGGGGGAGu -3'
miRNA:   3'- -GUCUCCu---CCUCGuCCUCCU-------CCUCCUC- -5'
31103 3' -59.3 NC_006560.1 + 27025 0.67 0.679255
Target:  5'- gAGAGGggcgagAGGGGCGaGAGGGGcgaGAGGGGg -3'
miRNA:   3'- gUCUCC------UCCUCGUcCUCCUC---CUCCUC- -5'
31103 3' -59.3 NC_006560.1 + 26497 0.67 0.679255
Target:  5'- -cGGGGGGcGGGCGcGcGAGGGGGcGGGGg -3'
miRNA:   3'- guCUCCUC-CUCGU-C-CUCCUCCuCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.