miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31103 5' -70.1 NC_006560.1 + 30490 1.09 0.000211
Target:  5'- aGGCGCCCCGGCCCCCCGCGCCUCCGGc -3'
miRNA:   3'- -CCGCGGGGCCGGGGGGCGCGGAGGCC- -5'
31103 5' -70.1 NC_006560.1 + 21698 0.9 0.00684
Target:  5'- cGGCGCCgCCGGCcgCCCCCGCGCC-CCGGg -3'
miRNA:   3'- -CCGCGG-GGCCG--GGGGGCGCGGaGGCC- -5'
31103 5' -70.1 NC_006560.1 + 55701 0.87 0.010713
Target:  5'- gGGCGCCa-GGCCCgCCCGCGCCUCCGa -3'
miRNA:   3'- -CCGCGGggCCGGG-GGGCGCGGAGGCc -5'
31103 5' -70.1 NC_006560.1 + 31872 0.84 0.017183
Target:  5'- gGGCGcCCCCGGCCCgCCGCGCgaggCCGGg -3'
miRNA:   3'- -CCGC-GGGGCCGGGgGGCGCGga--GGCC- -5'
31103 5' -70.1 NC_006560.1 + 27935 0.83 0.019941
Target:  5'- uGGCGCCUC-GCgCCCCCGCGCC-CCGGg -3'
miRNA:   3'- -CCGCGGGGcCG-GGGGGCGCGGaGGCC- -5'
31103 5' -70.1 NC_006560.1 + 150305 0.83 0.020902
Target:  5'- cGCGCcgccgcgggagggCCCGGCCCCCCGCGCCgcguuucCCGGc -3'
miRNA:   3'- cCGCG-------------GGGCCGGGGGGCGCGGa------GGCC- -5'
31103 5' -70.1 NC_006560.1 + 144209 0.83 0.021963
Target:  5'- cGGCGCCCgccucccugccggCGGCCCCCCGcCGCCUcuccuccugcCCGGg -3'
miRNA:   3'- -CCGCGGG-------------GCCGGGGGGC-GCGGA----------GGCC- -5'
31103 5' -70.1 NC_006560.1 + 47393 0.83 0.023135
Target:  5'- cGGCcCCCUGGaCCCCCCGCGUCgCCGGg -3'
miRNA:   3'- -CCGcGGGGCC-GGGGGGCGCGGaGGCC- -5'
31103 5' -70.1 NC_006560.1 + 142504 0.82 0.024309
Target:  5'- cGGCGCCCgGG-CCCCgGCGCCcCCGGg -3'
miRNA:   3'- -CCGCGGGgCCgGGGGgCGCGGaGGCC- -5'
31103 5' -70.1 NC_006560.1 + 121888 0.82 0.02455
Target:  5'- cGGCGUCCCGGCgcgccgcccucccguCCCCCGCGCCcCgCGGg -3'
miRNA:   3'- -CCGCGGGGCCG---------------GGGGGCGCGGaG-GCC- -5'
31103 5' -70.1 NC_006560.1 + 24322 0.81 0.028193
Target:  5'- cGCGCCCUcgGGCCgCUCCGCGCCUCgGGc -3'
miRNA:   3'- cCGCGGGG--CCGG-GGGGCGCGGAGgCC- -5'
31103 5' -70.1 NC_006560.1 + 12648 0.81 0.031116
Target:  5'- cGGcCGCCCCGGCCaccagCCCCGCGCCggCCa- -3'
miRNA:   3'- -CC-GCGGGGCCGG-----GGGGCGCGGa-GGcc -5'
31103 5' -70.1 NC_006560.1 + 145269 0.81 0.032688
Target:  5'- gGGaGCCCCGGCCCCCCG-GCCccCUGGg -3'
miRNA:   3'- -CCgCGGGGCCGGGGGGCgCGGa-GGCC- -5'
31103 5' -70.1 NC_006560.1 + 144386 0.8 0.033503
Target:  5'- cGGCGUCCgCgggccggcgGGCCCCCCGgGCCUCCGc -3'
miRNA:   3'- -CCGCGGG-G---------CCGGGGGGCgCGGAGGCc -5'
31103 5' -70.1 NC_006560.1 + 34965 0.8 0.033503
Target:  5'- gGGCGCCgggcuccgCCgGGCCCCCCggGCGCCUCgGGg -3'
miRNA:   3'- -CCGCGG--------GG-CCGGGGGG--CGCGGAGgCC- -5'
31103 5' -70.1 NC_006560.1 + 47735 0.8 0.036966
Target:  5'- cGGgGCCCCGGCCCgCgGCGCCgCCGc -3'
miRNA:   3'- -CCgCGGGGCCGGGgGgCGCGGaGGCc -5'
31103 5' -70.1 NC_006560.1 + 145846 0.8 0.038827
Target:  5'- gGGCGCCCCccucGGcCCCCCCGCGCgUCgcgCGGc -3'
miRNA:   3'- -CCGCGGGG----CC-GGGGGGCGCGgAG---GCC- -5'
31103 5' -70.1 NC_006560.1 + 22223 0.8 0.038827
Target:  5'- cGCgGCCCCGGCCcgggCCCCGCGCCgcgagUCGGu -3'
miRNA:   3'- cCG-CGGGGCCGG----GGGGCGCGGa----GGCC- -5'
31103 5' -70.1 NC_006560.1 + 142337 0.79 0.039791
Target:  5'- uGGCGCagCCgGGCCCCgCgCGCGCCUCgGGg -3'
miRNA:   3'- -CCGCG--GGgCCGGGG-G-GCGCGGAGgCC- -5'
31103 5' -70.1 NC_006560.1 + 72314 0.79 0.039791
Target:  5'- -cCGCCCCGGCggauccggggCCCgCCGCGCCUCCGu -3'
miRNA:   3'- ccGCGGGGCCG----------GGG-GGCGCGGAGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.