Results 1 - 20 of 612 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31103 | 5' | -70.1 | NC_006560.1 | + | 68256 | 0.66 | 0.369837 |
Target: 5'- gGGCGCacgggcucccggagaCCGcGCUCCUCGCGgagaaCCUcCCGGg -3' miRNA: 3'- -CCGCGg--------------GGC-CGGGGGGCGC-----GGA-GGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 145269 | 0.81 | 0.032688 |
Target: 5'- gGGaGCCCCGGCCCCCCG-GCCccCUGGg -3' miRNA: 3'- -CCgCGGGGCCGGGGGGCgCGGa-GGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 144386 | 0.8 | 0.033503 |
Target: 5'- cGGCGUCCgCgggccggcgGGCCCCCCGgGCCUCCGc -3' miRNA: 3'- -CCGCGGG-G---------CCGGGGGGCgCGGAGGCc -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 34965 | 0.8 | 0.033503 |
Target: 5'- gGGCGCCgggcuccgCCgGGCCCCCCggGCGCCUCgGGg -3' miRNA: 3'- -CCGCGG--------GG-CCGGGGGG--CGCGGAGgCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 47735 | 0.8 | 0.036966 |
Target: 5'- cGGgGCCCCGGCCCgCgGCGCCgCCGc -3' miRNA: 3'- -CCgCGGGGCCGGGgGgCGCGGaGGCc -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 22223 | 0.8 | 0.038827 |
Target: 5'- cGCgGCCCCGGCCcgggCCCCGCGCCgcgagUCGGu -3' miRNA: 3'- cCG-CGGGGCCGG----GGGGCGCGGa----GGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 145846 | 0.8 | 0.038827 |
Target: 5'- gGGCGCCCCccucGGcCCCCCCGCGCgUCgcgCGGc -3' miRNA: 3'- -CCGCGGGG----CC-GGGGGGCGCGgAG---GCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 89531 | 0.79 | 0.039791 |
Target: 5'- aGCGaCCCCGGCaCCCgCGCGCCcggCCGGc -3' miRNA: 3'- cCGC-GGGGCCG-GGGgGCGCGGa--GGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 142337 | 0.79 | 0.039791 |
Target: 5'- uGGCGCagCCgGGCCCCgCgCGCGCCUCgGGg -3' miRNA: 3'- -CCGCG--GGgCCGGGG-G-GCGCGGAGgCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 12648 | 0.81 | 0.031116 |
Target: 5'- cGGcCGCCCCGGCCaccagCCCCGCGCCggCCa- -3' miRNA: 3'- -CC-GCGGGGCCGG-----GGGGCGCGGa-GGcc -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 24322 | 0.81 | 0.028193 |
Target: 5'- cGCGCCCUcgGGCCgCUCCGCGCCUCgGGc -3' miRNA: 3'- cCGCGGGG--CCGG-GGGGCGCGGAGgCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 121888 | 0.82 | 0.02455 |
Target: 5'- cGGCGUCCCGGCgcgccgcccucccguCCCCCGCGCCcCgCGGg -3' miRNA: 3'- -CCGCGGGGCCG---------------GGGGGCGCGGaG-GCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 21698 | 0.9 | 0.00684 |
Target: 5'- cGGCGCCgCCGGCcgCCCCCGCGCC-CCGGg -3' miRNA: 3'- -CCGCGG-GGCCG--GGGGGCGCGGaGGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 55701 | 0.87 | 0.010713 |
Target: 5'- gGGCGCCa-GGCCCgCCCGCGCCUCCGa -3' miRNA: 3'- -CCGCGGggCCGGG-GGGCGCGGAGGCc -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 31872 | 0.84 | 0.017183 |
Target: 5'- gGGCGcCCCCGGCCCgCCGCGCgaggCCGGg -3' miRNA: 3'- -CCGC-GGGGCCGGGgGGCGCGga--GGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 27935 | 0.83 | 0.019941 |
Target: 5'- uGGCGCCUC-GCgCCCCCGCGCC-CCGGg -3' miRNA: 3'- -CCGCGGGGcCG-GGGGGCGCGGaGGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 150305 | 0.83 | 0.020902 |
Target: 5'- cGCGCcgccgcgggagggCCCGGCCCCCCGCGCCgcguuucCCGGc -3' miRNA: 3'- cCGCG-------------GGGCCGGGGGGCGCGGa------GGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 144209 | 0.83 | 0.021963 |
Target: 5'- cGGCGCCCgccucccugccggCGGCCCCCCGcCGCCUcuccuccugcCCGGg -3' miRNA: 3'- -CCGCGGG-------------GCCGGGGGGC-GCGGA----------GGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 47393 | 0.83 | 0.023135 |
Target: 5'- cGGCcCCCUGGaCCCCCCGCGUCgCCGGg -3' miRNA: 3'- -CCGcGGGGCC-GGGGGGCGCGGaGGCC- -5' |
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31103 | 5' | -70.1 | NC_006560.1 | + | 142504 | 0.82 | 0.024309 |
Target: 5'- cGGCGCCCgGG-CCCCgGCGCCcCCGGg -3' miRNA: 3'- -CCGCGGGgCCgGGGGgCGCGGaGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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