miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31103 5' -70.1 NC_006560.1 + 92 0.78 0.049595
Target:  5'- cGCGCCCCGcGCCccgcCCCCGCGgCCgcggCCGGc -3'
miRNA:   3'- cCGCGGGGC-CGG----GGGGCGC-GGa---GGCC- -5'
31103 5' -70.1 NC_006560.1 + 156 0.71 0.155656
Target:  5'- cGCgGUCCCGGCCccgCCCCGCGgUcCCGGc -3'
miRNA:   3'- cCG-CGGGGCCGG---GGGGCGCgGaGGCC- -5'
31103 5' -70.1 NC_006560.1 + 211 0.66 0.34011
Target:  5'- cGCGCCgCCgcgggagGGCCCggCCCGCGgCUCggugCGGg -3'
miRNA:   3'- cCGCGG-GG-------CCGGG--GGGCGCgGAG----GCC- -5'
31103 5' -70.1 NC_006560.1 + 328 0.71 0.16296
Target:  5'- --gGCCCCGGCCCCCUcuCGCC-CCu- -3'
miRNA:   3'- ccgCGGGGCCGGGGGGc-GCGGaGGcc -5'
31103 5' -70.1 NC_006560.1 + 397 0.67 0.288999
Target:  5'- cGUGCgCCCGcCCCCCCcCGCC-CCGc -3'
miRNA:   3'- cCGCG-GGGCcGGGGGGcGCGGaGGCc -5'
31103 5' -70.1 NC_006560.1 + 428 0.75 0.082459
Target:  5'- gGGUuCCCCGGCCUCCgCG-GCCUCCGcGg -3'
miRNA:   3'- -CCGcGGGGCCGGGGG-GCgCGGAGGC-C- -5'
31103 5' -70.1 NC_006560.1 + 483 0.66 0.327243
Target:  5'- -cCGUCCCGGCCCCCguCGgucucgcucuccCGCCacgggcgCCGGg -3'
miRNA:   3'- ccGCGGGGCCGGGGG--GC------------GCGGa------GGCC- -5'
31103 5' -70.1 NC_006560.1 + 543 0.77 0.056021
Target:  5'- cGCGCCCCGGguccccggcguCCCCCgCGCGCC-CCGu -3'
miRNA:   3'- cCGCGGGGCC-----------GGGGG-GCGCGGaGGCc -5'
31103 5' -70.1 NC_006560.1 + 586 0.74 0.104652
Target:  5'- cGCucuCCCCGGCuCCUCCGCGCCg-CGGg -3'
miRNA:   3'- cCGc--GGGGCCG-GGGGGCGCGGagGCC- -5'
31103 5' -70.1 NC_006560.1 + 664 0.66 0.340798
Target:  5'- cGCaCCCCGGCgCgCCCGCGgCg-CGGg -3'
miRNA:   3'- cCGcGGGGCCGgG-GGGCGCgGagGCC- -5'
31103 5' -70.1 NC_006560.1 + 715 0.71 0.155656
Target:  5'- cGCgGCCCCGucCCCCCCGCGgCC-CCGu -3'
miRNA:   3'- cCG-CGGGGCc-GGGGGGCGC-GGaGGCc -5'
31103 5' -70.1 NC_006560.1 + 750 0.68 0.277055
Target:  5'- cGCgGCCCCGucccccCCCCCCGCGgCg-CGGg -3'
miRNA:   3'- cCG-CGGGGCc-----GGGGGGCGCgGagGCC- -5'
31103 5' -70.1 NC_006560.1 + 838 0.68 0.271232
Target:  5'- -aCGCCCacgaGGCCCCgCGCGCgC-CCGc -3'
miRNA:   3'- ccGCGGGg---CCGGGGgGCGCG-GaGGCc -5'
31103 5' -70.1 NC_006560.1 + 884 0.75 0.086505
Target:  5'- cGCGCgCCC-GCCCCCCGCcgggGCCgCCGGc -3'
miRNA:   3'- cCGCG-GGGcCGGGGGGCG----CGGaGGCC- -5'
31103 5' -70.1 NC_006560.1 + 998 0.74 0.09382
Target:  5'- -uCGCCCCGGCCggggcgccgucuccgCCCCGcCGUCUCCGc -3'
miRNA:   3'- ccGCGGGGCCGG---------------GGGGC-GCGGAGGCc -5'
31103 5' -70.1 NC_006560.1 + 1111 0.75 0.088598
Target:  5'- cGGCgcgaGCCCCGcgacgcGCCCCCCuccgGCccgGCCUCCGGg -3'
miRNA:   3'- -CCG----CGGGGC------CGGGGGG----CG---CGGAGGCC- -5'
31103 5' -70.1 NC_006560.1 + 1225 0.73 0.120553
Target:  5'- cGGgGCCCCugccgcGCCCCCaCGCaGCC-CCGGc -3'
miRNA:   3'- -CCgCGGGGc-----CGGGGG-GCG-CGGaGGCC- -5'
31103 5' -70.1 NC_006560.1 + 1258 0.7 0.191003
Target:  5'- cGGgGCCCCcGCgaagCCCCCGCgaagcccccGCCgcgCCGGg -3'
miRNA:   3'- -CCgCGGGGcCG----GGGGGCG---------CGGa--GGCC- -5'
31103 5' -70.1 NC_006560.1 + 1321 0.68 0.243588
Target:  5'- cGGC-UCCCGaGCCCCCgGgCGCCcgaCGGg -3'
miRNA:   3'- -CCGcGGGGC-CGGGGGgC-GCGGag-GCC- -5'
31103 5' -70.1 NC_006560.1 + 1355 0.7 0.191003
Target:  5'- uGCGCgCgGGUCCCCCGCGgC-CCGc -3'
miRNA:   3'- cCGCGgGgCCGGGGGGCGCgGaGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.