miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31104 3' -56.9 NC_006560.1 + 150346 0.66 0.893106
Target:  5'- cCGGCGG-GGCGGuuCGGCGGCGGgGGgGg -3'
miRNA:   3'- -GCUGCUgUCGCU--GCUGCCGCUgCUgC- -5'
31104 3' -56.9 NC_006560.1 + 150189 0.71 0.69943
Target:  5'- cCGACGGCGGcCGAgagUGAgGGUGGCGAgCGc -3'
miRNA:   3'- -GCUGCUGUC-GCU---GCUgCCGCUGCU-GC- -5'
31104 3' -56.9 NC_006560.1 + 150033 0.74 0.494443
Target:  5'- cCGACGGCgGGCGAgGACGaccuccGCGGCGGCc -3'
miRNA:   3'- -GCUGCUG-UCGCUgCUGC------CGCUGCUGc -5'
31104 3' -56.9 NC_006560.1 + 149917 0.69 0.775009
Target:  5'- aCGGCGGCcgggcGCGGCGuCGGUGGCcGCa -3'
miRNA:   3'- -GCUGCUGu----CGCUGCuGCCGCUGcUGc -5'
31104 3' -56.9 NC_006560.1 + 149473 0.72 0.64027
Target:  5'- aGGCGGCAGaCGGcCGGCGGCccgGGcCGACGc -3'
miRNA:   3'- gCUGCUGUC-GCU-GCUGCCG---CU-GCUGC- -5'
31104 3' -56.9 NC_006560.1 + 149320 0.72 0.64027
Target:  5'- gGACcaACGGCGGgccggaGACGGCGGCGGCu -3'
miRNA:   3'- gCUGc-UGUCGCUg-----CUGCCGCUGCUGc -5'
31104 3' -56.9 NC_006560.1 + 148965 0.69 0.775009
Target:  5'- gGACG-CGGUGGCGcgaccaaccgGCGGCGcCGGCa -3'
miRNA:   3'- gCUGCuGUCGCUGC----------UGCCGCuGCUGc -5'
31104 3' -56.9 NC_006560.1 + 148507 0.76 0.38947
Target:  5'- cCGGCggGACGGCGGucCGACGGCGACuGGCu -3'
miRNA:   3'- -GCUG--CUGUCGCU--GCUGCCGCUG-CUGc -5'
31104 3' -56.9 NC_006560.1 + 147042 0.73 0.571057
Target:  5'- aGACGGCcggggGGCGGCGgggggaggcggGCGGCGAguCGGCGa -3'
miRNA:   3'- gCUGCUG-----UCGCUGC-----------UGCCGCU--GCUGC- -5'
31104 3' -56.9 NC_006560.1 + 146984 0.66 0.917152
Target:  5'- gGugGGCGGgGcAUGGCGGCucGCGGCc -3'
miRNA:   3'- gCugCUGUCgC-UGCUGCCGc-UGCUGc -5'
31104 3' -56.9 NC_006560.1 + 146838 0.7 0.737913
Target:  5'- gGGCGugcuGCGGCGGCGcgggGCGG-GGCGGCGc -3'
miRNA:   3'- gCUGC----UGUCGCUGC----UGCCgCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 146446 0.69 0.765894
Target:  5'- cCGACGACgcgggaGGCGGCGGaggagcggggGGCGgaGCGGCGg -3'
miRNA:   3'- -GCUGCUG------UCGCUGCUg---------CCGC--UGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 146402 0.68 0.826892
Target:  5'- gGGCGG-AGCGGCGGgcggaGGCGgaGCGGCGg -3'
miRNA:   3'- gCUGCUgUCGCUGCUg----CCGC--UGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 146209 0.66 0.89246
Target:  5'- cCG-UGACGGUcuuguugagguagGGCGccAUGGCGACGACGc -3'
miRNA:   3'- -GCuGCUGUCG-------------CUGC--UGCCGCUGCUGC- -5'
31104 3' -56.9 NC_006560.1 + 144765 0.69 0.801599
Target:  5'- cCGcCGGCGGCGACGGCccccugccccucGGCccccGGCGGCu -3'
miRNA:   3'- -GCuGCUGUCGCUGCUG------------CCG----CUGCUGc -5'
31104 3' -56.9 NC_006560.1 + 144373 0.76 0.405947
Target:  5'- gCGGCGGCAGgGGCGGCGuccGCGGgcCGGCGg -3'
miRNA:   3'- -GCUGCUGUCgCUGCUGC---CGCU--GCUGC- -5'
31104 3' -56.9 NC_006560.1 + 144125 0.68 0.842934
Target:  5'- uGGCucCGGCGGCcGCGGCGGCGcCc -3'
miRNA:   3'- gCUGcuGUCGCUGcUGCCGCUGCuGc -5'
31104 3' -56.9 NC_006560.1 + 143382 0.66 0.911472
Target:  5'- aGGCGuACcgGGgGGCGGCGGCccuCGGCGc -3'
miRNA:   3'- gCUGC-UG--UCgCUGCUGCCGcu-GCUGC- -5'
31104 3' -56.9 NC_006560.1 + 142942 0.7 0.71592
Target:  5'- gGGCGACccucgagcucgcgaGGCGACGcgcgggccgccGCGGCGAgCGACc -3'
miRNA:   3'- gCUGCUG--------------UCGCUGC-----------UGCCGCU-GCUGc -5'
31104 3' -56.9 NC_006560.1 + 142681 0.67 0.889198
Target:  5'- gGGCGGCGGCGGaccggagggggcgccCGGcCGGCcGCGGCc -3'
miRNA:   3'- gCUGCUGUCGCU---------------GCU-GCCGcUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.