miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31115 5' -63.9 NC_006560.1 + 76644 0.66 0.49956
Target:  5'- uCGCUGGaGGcCGCCGCG-GCCGagUGGGa -3'
miRNA:   3'- cGCGACC-CC-GCGGCGCgCGGUa-GCUU- -5'
31115 5' -63.9 NC_006560.1 + 76519 0.66 0.498637
Target:  5'- gGCGCgucuucGGGGCgcacccgcugaccGCCGCGCGCgA-CGGc -3'
miRNA:   3'- -CGCGa-----CCCCG-------------CGGCGCGCGgUaGCUu -5'
31115 5' -63.9 NC_006560.1 + 23514 0.66 0.518173
Target:  5'- aGUGcCUGGcGGUcuGCCGCGCcGUCAUgGAGg -3'
miRNA:   3'- -CGC-GACC-CCG--CGGCGCG-CGGUAgCUU- -5'
31115 5' -63.9 NC_006560.1 + 21717 0.66 0.507901
Target:  5'- cGCGCcccGGGGCggagccgGCCGgGCGCCGcccgUCGc- -3'
miRNA:   3'- -CGCGa--CCCCG-------CGGCgCGCGGU----AGCuu -5'
31115 5' -63.9 NC_006560.1 + 4111 0.66 0.518173
Target:  5'- -gGCUGGcGGCGaggaagcccuuCUGCGCGCgGUCGu- -3'
miRNA:   3'- cgCGACC-CCGC-----------GGCGCGCGgUAGCuu -5'
31115 5' -63.9 NC_006560.1 + 75377 0.66 0.49956
Target:  5'- -aGCUGGaGGCgGCCGC-CGCCGaccuggCGGAg -3'
miRNA:   3'- cgCGACC-CCG-CGGCGcGCGGUa-----GCUU- -5'
31115 5' -63.9 NC_006560.1 + 21304 0.66 0.508831
Target:  5'- gGCGCgagcGGGCGCgGCGaUGCUAaCGAGg -3'
miRNA:   3'- -CGCGac--CCCGCGgCGC-GCGGUaGCUU- -5'
31115 5' -63.9 NC_006560.1 + 120554 0.66 0.556172
Target:  5'- cCGCcgGGuGGCGCCucuGCGCGCUcUCGu- -3'
miRNA:   3'- cGCGa-CC-CCGCGG---CGCGCGGuAGCuu -5'
31115 5' -63.9 NC_006560.1 + 149889 0.66 0.508831
Target:  5'- cCGCggaaGGGCcCCGCGCGCCGaaGGAa -3'
miRNA:   3'- cGCGac--CCCGcGGCGCGCGGUagCUU- -5'
31115 5' -63.9 NC_006560.1 + 1005 0.66 0.508831
Target:  5'- -gGCcGGGGCGCCGUcuccgcccCGCCGUCu-- -3'
miRNA:   3'- cgCGaCCCCGCGGCGc-------GCGGUAGcuu -5'
31115 5' -63.9 NC_006560.1 + 21262 0.66 0.508831
Target:  5'- gGCGCggugagggcGGcGGCGgCGCgGCGCCcUCGAc -3'
miRNA:   3'- -CGCGa--------CC-CCGCgGCG-CGCGGuAGCUu -5'
31115 5' -63.9 NC_006560.1 + 139286 0.66 0.518173
Target:  5'- gGCGCgggGGGGCaCCGgGUGCCccgUGGg -3'
miRNA:   3'- -CGCGa--CCCCGcGGCgCGCGGua-GCUu -5'
31115 5' -63.9 NC_006560.1 + 135078 0.66 0.507901
Target:  5'- gGCGUcgGGGGCGCCGCcguaccgGCGCaccaggcgcUCGGg -3'
miRNA:   3'- -CGCGa-CCCCGCGGCG-------CGCGgu-------AGCUu -5'
31115 5' -63.9 NC_006560.1 + 7128 0.66 0.50326
Target:  5'- aGCGCgGGGaGCGCCGCacguccgggcacaugGCGUCcgCGc- -3'
miRNA:   3'- -CGCGaCCC-CGCGGCG---------------CGCGGuaGCuu -5'
31115 5' -63.9 NC_006560.1 + 4889 0.66 0.508831
Target:  5'- gGCGCcgGcGGGgGCCGCGuCGCgcUCGGGg -3'
miRNA:   3'- -CGCGa-C-CCCgCGGCGC-GCGguAGCUU- -5'
31115 5' -63.9 NC_006560.1 + 107493 0.66 0.508831
Target:  5'- cGCGCUGGGaGUcgugcugaucGCCGCG-GCCcUCGc- -3'
miRNA:   3'- -CGCGACCC-CG----------CGGCGCgCGGuAGCuu -5'
31115 5' -63.9 NC_006560.1 + 37687 0.66 0.518173
Target:  5'- cGCGCc-GGGCGCCGgGCcGCUcUUGAu -3'
miRNA:   3'- -CGCGacCCCGCGGCgCG-CGGuAGCUu -5'
31115 5' -63.9 NC_006560.1 + 39101 0.66 0.508831
Target:  5'- cGCGCUc-GGCgGCCGCGCGCUc-CGAGa -3'
miRNA:   3'- -CGCGAccCCG-CGGCGCGCGGuaGCUU- -5'
31115 5' -63.9 NC_006560.1 + 140208 0.66 0.517236
Target:  5'- -gGCUccaggagGGGGCGCCaCGCGUCGcCGAc -3'
miRNA:   3'- cgCGA-------CCCCGCGGcGCGCGGUaGCUu -5'
31115 5' -63.9 NC_006560.1 + 139353 0.66 0.518173
Target:  5'- cGCGCgGGGGgGCCGuCGUGCgG-CGc- -3'
miRNA:   3'- -CGCGaCCCCgCGGC-GCGCGgUaGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.