Results 1 - 20 of 230 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31115 | 5' | -63.9 | NC_006560.1 | + | 16538 | 1.07 | 0.000714 |
Target: 5'- gGCGCUGGGGCGCCGCGCGCCAUCGAAg -3' miRNA: 3'- -CGCGACCCCGCGGCGCGCGGUAGCUU- -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 74434 | 0.78 | 0.08705 |
Target: 5'- gGCGC-GGGaccgccucggcgcGCGCgCGCGCGCCAUCGAGg -3' miRNA: 3'- -CGCGaCCC-------------CGCG-GCGCGCGGUAGCUU- -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 39405 | 0.77 | 0.104209 |
Target: 5'- cGgGCUcgGGGGCGCCGCgGCGCCGgggcCGAAc -3' miRNA: 3'- -CgCGA--CCCCGCGGCG-CGCGGUa---GCUU- -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 51854 | 0.76 | 0.118152 |
Target: 5'- cGCGCcccUGGGGCGCgGCGCGuCCGcgcUCGGg -3' miRNA: 3'- -CGCG---ACCCCGCGgCGCGC-GGU---AGCUu -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 83508 | 0.75 | 0.144114 |
Target: 5'- cGCGCgagGGGGCGggccgcgggCGCGCGCCcgCGGAg -3' miRNA: 3'- -CGCGa--CCCCGCg--------GCGCGCGGuaGCUU- -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 67983 | 0.75 | 0.144114 |
Target: 5'- aCGC-GGGG-GCCGCgGCGCCGUCGGg -3' miRNA: 3'- cGCGaCCCCgCGGCG-CGCGGUAGCUu -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 99317 | 0.75 | 0.147704 |
Target: 5'- gGCGCgGGGGCG-UGCGCGCCGaCGGc -3' miRNA: 3'- -CGCGaCCCCGCgGCGCGCGGUaGCUu -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 22971 | 0.75 | 0.151376 |
Target: 5'- -aGCUGGGcGaCGCCGCGCGCCAg---- -3' miRNA: 3'- cgCGACCC-C-GCGGCGCGCGGUagcuu -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 16301 | 0.75 | 0.151376 |
Target: 5'- gGCGCggcGGGGCGCgGgccCGCGCCcgCGAGg -3' miRNA: 3'- -CGCGa--CCCCGCGgC---GCGCGGuaGCUU- -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 33644 | 0.75 | 0.151376 |
Target: 5'- gGCGCcgGGGGCgGCCGCGgGCCGcuuaggCGAGc -3' miRNA: 3'- -CGCGa-CCCCG-CGGCGCgCGGUa-----GCUU- -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 62876 | 0.75 | 0.158968 |
Target: 5'- cGUGUUGGGGCGCaGCGUcucGCCGUCGc- -3' miRNA: 3'- -CGCGACCCCGCGgCGCG---CGGUAGCuu -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 48869 | 0.74 | 0.162892 |
Target: 5'- aGCGUccggGGGGCGCCcgucuccgcgGCGCGCCGcgCGAGc -3' miRNA: 3'- -CGCGa---CCCCGCGG----------CGCGCGGUa-GCUU- -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 95169 | 0.74 | 0.171001 |
Target: 5'- aGC-CUGGGGCGCUGCGUGCg--CGAGc -3' miRNA: 3'- -CGcGACCCCGCGGCGCGCGguaGCUU- -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 78636 | 0.74 | 0.17519 |
Target: 5'- cGCGCUGGu-CGCCGCGCGCCcgCu-- -3' miRNA: 3'- -CGCGACCccGCGGCGCGCGGuaGcuu -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 87869 | 0.74 | 0.17519 |
Target: 5'- cGCGgUGGGGCGCggguggggggGCGCGCCGUCc-- -3' miRNA: 3'- -CGCgACCCCGCGg---------CGCGCGGUAGcuu -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 128797 | 0.74 | 0.17947 |
Target: 5'- gGCGCUucaaGGGGCGCUGCGaCG-CGUCGGc -3' miRNA: 3'- -CGCGA----CCCCGCGGCGC-GCgGUAGCUu -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 5675 | 0.74 | 0.183843 |
Target: 5'- gGCGCgGGGGCgGCCgGCgGCGCCgcccGUCGAGg -3' miRNA: 3'- -CGCGaCCCCG-CGG-CG-CGCGG----UAGCUU- -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 118793 | 0.73 | 0.197528 |
Target: 5'- gGCGCUGGaGGCGCCcCuGCGCCAcgcgCGGc -3' miRNA: 3'- -CGCGACC-CCGCGGcG-CGCGGUa---GCUu -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 108599 | 0.73 | 0.202284 |
Target: 5'- uGCGCUu-GGCGCCGCGCgcGCCcgCGAGc -3' miRNA: 3'- -CGCGAccCCGCGGCGCG--CGGuaGCUU- -5' |
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31115 | 5' | -63.9 | NC_006560.1 | + | 35201 | 0.73 | 0.207139 |
Target: 5'- gGCGCcGGGGC-CCGgGCGCCGaacCGAAa -3' miRNA: 3'- -CGCGaCCCCGcGGCgCGCGGUa--GCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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