miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31115 5' -63.9 NC_006560.1 + 120554 0.66 0.556172
Target:  5'- cCGCcgGGuGGCGCCucuGCGCGCUcUCGu- -3'
miRNA:   3'- cGCGa-CC-CCGCGG---CGCGCGGuAGCuu -5'
31115 5' -63.9 NC_006560.1 + 95169 0.74 0.171001
Target:  5'- aGC-CUGGGGCGCUGCGUGCg--CGAGc -3'
miRNA:   3'- -CGcGACCCCGCGGCGCGCGguaGCUU- -5'
31115 5' -63.9 NC_006560.1 + 78636 0.74 0.17519
Target:  5'- cGCGCUGGu-CGCCGCGCGCCcgCu-- -3'
miRNA:   3'- -CGCGACCccGCGGCGCGCGGuaGcuu -5'
31115 5' -63.9 NC_006560.1 + 87869 0.74 0.17519
Target:  5'- cGCGgUGGGGCGCggguggggggGCGCGCCGUCc-- -3'
miRNA:   3'- -CGCgACCCCGCGg---------CGCGCGGUAGcuu -5'
31115 5' -63.9 NC_006560.1 + 128797 0.74 0.17947
Target:  5'- gGCGCUucaaGGGGCGCUGCGaCG-CGUCGGc -3'
miRNA:   3'- -CGCGA----CCCCGCGGCGC-GCgGUAGCUu -5'
31115 5' -63.9 NC_006560.1 + 5675 0.74 0.183843
Target:  5'- gGCGCgGGGGCgGCCgGCgGCGCCgcccGUCGAGg -3'
miRNA:   3'- -CGCGaCCCCG-CGG-CG-CGCGG----UAGCUU- -5'
31115 5' -63.9 NC_006560.1 + 118793 0.73 0.197528
Target:  5'- gGCGCUGGaGGCGCCcCuGCGCCAcgcgCGGc -3'
miRNA:   3'- -CGCGACC-CCGCGGcG-CGCGGUa---GCUu -5'
31115 5' -63.9 NC_006560.1 + 108599 0.73 0.202284
Target:  5'- uGCGCUu-GGCGCCGCGCgcGCCcgCGAGc -3'
miRNA:   3'- -CGCGAccCCGCGGCGCG--CGGuaGCUU- -5'
31115 5' -63.9 NC_006560.1 + 35201 0.73 0.207139
Target:  5'- gGCGCcGGGGC-CCGgGCGCCGaacCGAAa -3'
miRNA:   3'- -CGCGaCCCCGcGGCgCGCGGUa--GCUU- -5'
31115 5' -63.9 NC_006560.1 + 48869 0.74 0.162892
Target:  5'- aGCGUccggGGGGCGCCcgucuccgcgGCGCGCCGcgCGAGc -3'
miRNA:   3'- -CGCGa---CCCCGCGG----------CGCGCGGUa-GCUU- -5'
31115 5' -63.9 NC_006560.1 + 62876 0.75 0.158968
Target:  5'- cGUGUUGGGGCGCaGCGUcucGCCGUCGc- -3'
miRNA:   3'- -CGCGACCCCGCGgCGCG---CGGUAGCuu -5'
31115 5' -63.9 NC_006560.1 + 33644 0.75 0.151376
Target:  5'- gGCGCcgGGGGCgGCCGCGgGCCGcuuaggCGAGc -3'
miRNA:   3'- -CGCGa-CCCCG-CGGCGCgCGGUa-----GCUU- -5'
31115 5' -63.9 NC_006560.1 + 74434 0.78 0.08705
Target:  5'- gGCGC-GGGaccgccucggcgcGCGCgCGCGCGCCAUCGAGg -3'
miRNA:   3'- -CGCGaCCC-------------CGCG-GCGCGCGGUAGCUU- -5'
31115 5' -63.9 NC_006560.1 + 39405 0.77 0.104209
Target:  5'- cGgGCUcgGGGGCGCCGCgGCGCCGgggcCGAAc -3'
miRNA:   3'- -CgCGA--CCCCGCGGCG-CGCGGUa---GCUU- -5'
31115 5' -63.9 NC_006560.1 + 51854 0.76 0.118152
Target:  5'- cGCGCcccUGGGGCGCgGCGCGuCCGcgcUCGGg -3'
miRNA:   3'- -CGCG---ACCCCGCGgCGCGC-GGU---AGCUu -5'
31115 5' -63.9 NC_006560.1 + 67983 0.75 0.144114
Target:  5'- aCGC-GGGG-GCCGCgGCGCCGUCGGg -3'
miRNA:   3'- cGCGaCCCCgCGGCG-CGCGGUAGCUu -5'
31115 5' -63.9 NC_006560.1 + 83508 0.75 0.144114
Target:  5'- cGCGCgagGGGGCGggccgcgggCGCGCGCCcgCGGAg -3'
miRNA:   3'- -CGCGa--CCCCGCg--------GCGCGCGGuaGCUU- -5'
31115 5' -63.9 NC_006560.1 + 99317 0.75 0.147704
Target:  5'- gGCGCgGGGGCG-UGCGCGCCGaCGGc -3'
miRNA:   3'- -CGCGaCCCCGCgGCGCGCGGUaGCUu -5'
31115 5' -63.9 NC_006560.1 + 22971 0.75 0.151376
Target:  5'- -aGCUGGGcGaCGCCGCGCGCCAg---- -3'
miRNA:   3'- cgCGACCC-C-GCGGCGCGCGGUagcuu -5'
31115 5' -63.9 NC_006560.1 + 16301 0.75 0.151376
Target:  5'- gGCGCggcGGGGCGCgGgccCGCGCCcgCGAGg -3'
miRNA:   3'- -CGCGa--CCCCGCGgC---GCGCGGuaGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.