Results 1 - 20 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31121 | 5' | -63 | NC_006560.1 | + | 84882 | 0.66 | 0.537858 |
Target: 5'- cGUGCacaccauCCUGcGCGC-CGCCGCCgGCGa -3' miRNA: 3'- -CACGac-----GGAC-CGCGuGCGGCGG-UGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 134198 | 0.66 | 0.528283 |
Target: 5'- -aGCUGCugCUGGCGCGgGCcCGCgGgGUc -3' miRNA: 3'- caCGACG--GACCGCGUgCG-GCGgUgCA- -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 70798 | 0.66 | 0.537858 |
Target: 5'- -cGCcgGCC-GGCaGCACGCCcgaccagcgcGCCGCGg -3' miRNA: 3'- caCGa-CGGaCCG-CGUGCGG----------CGGUGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 94697 | 0.66 | 0.537858 |
Target: 5'- -aGCUGgCgcGGCGCgaGCuCCGCCACGa -3' miRNA: 3'- caCGACgGa-CCGCG--UGcGGCGGUGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 144119 | 0.66 | 0.528283 |
Target: 5'- --cCUGCCUGGCuccgGCG-GCCGCgGCGg -3' miRNA: 3'- cacGACGGACCG----CGUgCGGCGgUGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 85421 | 0.66 | 0.537858 |
Target: 5'- gGUGUUGa--GGgGCACGCCgugcGCCACGg -3' miRNA: 3'- -CACGACggaCCgCGUGCGG----CGGUGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 124924 | 0.66 | 0.528283 |
Target: 5'- -gGCUGCCUGaGCcccacccccgGCACGCCcCUGCGc -3' miRNA: 3'- caCGACGGAC-CG----------CGUGCGGcGGUGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 68303 | 0.66 | 0.547492 |
Target: 5'- -gGcCUG-CUGGCGCACcgccugGCCGUCGCGc -3' miRNA: 3'- caC-GACgGACCGCGUG------CGGCGGUGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 47730 | 0.66 | 0.547492 |
Target: 5'- -cGCUucgggGCCccGGCccGCgGCGCCGCCGCGa -3' miRNA: 3'- caCGA-----CGGa-CCG--CG-UGCGGCGGUGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 75414 | 0.66 | 0.537858 |
Target: 5'- -cGCgGCCcGGCGCGC-CCGCgACa- -3' miRNA: 3'- caCGaCGGaCCGCGUGcGGCGgUGca -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 130368 | 0.66 | 0.547492 |
Target: 5'- -cGCUcaacgacccgGCCcugUGGCGCGCGCUGUaCGCGa -3' miRNA: 3'- caCGA----------CGG---ACCGCGUGCGGCG-GUGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 74095 | 0.66 | 0.556209 |
Target: 5'- -gGCgGCCUGGCugGCGuCGCugggcgaCGCCGCGg -3' miRNA: 3'- caCGaCGGACCG--CGU-GCG-------GCGGUGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 16634 | 0.66 | 0.546527 |
Target: 5'- gGUGUacGCCgGGCggcgguuGCGCGCCGCC-CGg -3' miRNA: 3'- -CACGa-CGGaCCG-------CGUGCGGCGGuGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 78066 | 0.66 | 0.528283 |
Target: 5'- -gGCgGCCggcGGCGCG-GCCGCgGCGc -3' miRNA: 3'- caCGaCGGa--CCGCGUgCGGCGgUGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 25163 | 0.66 | 0.537858 |
Target: 5'- -cGuCUaCCUGGCGCuggaccGCGCgGCCGCGc -3' miRNA: 3'- caC-GAcGGACCGCG------UGCGgCGGUGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 130811 | 0.66 | 0.586512 |
Target: 5'- -cGCgggGCCacGCGCAgGCCGUgACGg -3' miRNA: 3'- caCGa--CGGacCGCGUgCGGCGgUGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 97531 | 0.66 | 0.528283 |
Target: 5'- aUGCUGg--GGCGCAuCGCCaucGCCugGUg -3' miRNA: 3'- cACGACggaCCGCGU-GCGG---CGGugCA- -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 3979 | 0.66 | 0.547492 |
Target: 5'- -cGCUGCgC-GGCGaCACGCCcGCgGCGc -3' miRNA: 3'- caCGACG-GaCCGC-GUGCGG-CGgUGCa -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 78146 | 0.66 | 0.547492 |
Target: 5'- uGUGcCUGCC-GaGCGcCGCGCuCGCCGCu- -3' miRNA: 3'- -CAC-GACGGaC-CGC-GUGCG-GCGGUGca -5' |
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31121 | 5' | -63 | NC_006560.1 | + | 134749 | 0.66 | 0.528283 |
Target: 5'- aUGCgcGCCgagucgaaGGCGCGCGCCaGCgCGCGc -3' miRNA: 3'- cACGa-CGGa-------CCGCGUGCGG-CG-GUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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