miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31121 5' -63 NC_006560.1 + 184 0.69 0.375978
Target:  5'- -gGCcccGCCggcguuuuuuuccgcGCGCGCGCCGCCGCGg -3'
miRNA:   3'- caCGa--CGGac-------------CGCGUGCGGCGGUGCa -5'
31121 5' -63 NC_006560.1 + 1518 0.76 0.131959
Target:  5'- cGUGCaucggGCCccgGGCGCGCGCCcgGCCACGc -3'
miRNA:   3'- -CACGa----CGGa--CCGCGUGCGG--CGGUGCa -5'
31121 5' -63 NC_006560.1 + 2185 0.74 0.177574
Target:  5'- -gGCcucggGCCcGGCGCGCGCgGCCGCGc -3'
miRNA:   3'- caCGa----CGGaCCGCGUGCGgCGGUGCa -5'
31121 5' -63 NC_006560.1 + 3243 0.7 0.361898
Target:  5'- cGUGUgggcggGCCcgggcGGCGCGCggcgccaGCCGCCGCGg -3'
miRNA:   3'- -CACGa-----CGGa----CCGCGUG-------CGGCGGUGCa -5'
31121 5' -63 NC_006560.1 + 3651 0.67 0.518772
Target:  5'- -gGCgGCCUcGGCGC-CGCCGgggaCGCGg -3'
miRNA:   3'- caCGaCGGA-CCGCGuGCGGCg---GUGCa -5'
31121 5' -63 NC_006560.1 + 3778 0.66 0.586512
Target:  5'- -gGCggGaCCgcGGCGCGCGCgGCCGCc- -3'
miRNA:   3'- caCGa-C-GGa-CCGCGUGCGgCGGUGca -5'
31121 5' -63 NC_006560.1 + 3979 0.66 0.547492
Target:  5'- -cGCUGCgC-GGCGaCACGCCcGCgGCGc -3'
miRNA:   3'- caCGACG-GaCCGC-GUGCGG-CGgUGCa -5'
31121 5' -63 NC_006560.1 + 4575 0.69 0.402733
Target:  5'- -gGCUcGCCgcUGGCGUA-GCCGUCGCGg -3'
miRNA:   3'- caCGA-CGG--ACCGCGUgCGGCGGUGCa -5'
31121 5' -63 NC_006560.1 + 4672 0.72 0.265812
Target:  5'- -aGCgGCCcgUGGCGuCGCGCCcgGCCACGg -3'
miRNA:   3'- caCGaCGG--ACCGC-GUGCGG--CGGUGCa -5'
31121 5' -63 NC_006560.1 + 5683 0.66 0.528283
Target:  5'- -gGCgGCC-GGCG-GCGCCGCC-CGUc -3'
miRNA:   3'- caCGaCGGaCCGCgUGCGGCGGuGCA- -5'
31121 5' -63 NC_006560.1 + 5721 0.68 0.419525
Target:  5'- aUGCgGCC-GGCG-GCGCCGCC-CGUc -3'
miRNA:   3'- cACGaCGGaCCGCgUGCGGCGGuGCA- -5'
31121 5' -63 NC_006560.1 + 6095 0.69 0.394498
Target:  5'- -cGC-GUCgagGGCGcCGCGCCGCCGCc- -3'
miRNA:   3'- caCGaCGGa--CCGC-GUGCGGCGGUGca -5'
31121 5' -63 NC_006560.1 + 8013 1.06 0.000849
Target:  5'- gGUGCUGCCUGGCGCACGCCGCCACGUg -3'
miRNA:   3'- -CACGACGGACCGCGUGCGGCGGUGCA- -5'
31121 5' -63 NC_006560.1 + 12593 0.71 0.311392
Target:  5'- -cGCacgUGCUUGGCGgcCGCGCgGCCGCGa -3'
miRNA:   3'- caCG---ACGGACCGC--GUGCGgCGGUGCa -5'
31121 5' -63 NC_006560.1 + 13614 0.68 0.463289
Target:  5'- -cGCUcgcGCCagGGCccgGUcCGCCGCCACGUa -3'
miRNA:   3'- caCGA---CGGa-CCG---CGuGCGGCGGUGCA- -5'
31121 5' -63 NC_006560.1 + 15439 0.68 0.463289
Target:  5'- -cGC-GCCcGGCGCgcguucGCGCCGCC-CGg -3'
miRNA:   3'- caCGaCGGaCCGCG------UGCGGCGGuGCa -5'
31121 5' -63 NC_006560.1 + 16321 0.66 0.55718
Target:  5'- -cGCgcccGCgaGGCGCaggcacagcaGCGCCGCCAgGa -3'
miRNA:   3'- caCGa---CGgaCCGCG----------UGCGGCGGUgCa -5'
31121 5' -63 NC_006560.1 + 16387 0.67 0.518772
Target:  5'- -gGCgGCgCgGGCGgGCGUCGCCugGa -3'
miRNA:   3'- caCGaCG-GaCCGCgUGCGGCGGugCa -5'
31121 5' -63 NC_006560.1 + 16634 0.66 0.546527
Target:  5'- gGUGUacGCCgGGCggcgguuGCGCGCCGCC-CGg -3'
miRNA:   3'- -CACGa-CGGaCCG-------CGUGCGGCGGuGCa -5'
31121 5' -63 NC_006560.1 + 17512 0.68 0.445489
Target:  5'- -cGCgggGCCggcGGCGC-CGCCGUCGuCGUc -3'
miRNA:   3'- caCGa--CGGa--CCGCGuGCGGCGGU-GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.