miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31121 5' -63 NC_006560.1 + 130811 0.66 0.586512
Target:  5'- -cGCgggGCCacGCGCAgGCCGUgACGg -3'
miRNA:   3'- caCGa--CGGacCGCGUgCGGCGgUGCa -5'
31121 5' -63 NC_006560.1 + 59009 0.75 0.173291
Target:  5'- aUGCggaccggGCCgGcGCGCugGCCGCCGCGc -3'
miRNA:   3'- cACGa------CGGaC-CGCGugCGGCGGUGCa -5'
31121 5' -63 NC_006560.1 + 81395 0.75 0.173291
Target:  5'- cUGCUGCCgggccagcgagGGCGCGCGCCaCCACc- -3'
miRNA:   3'- cACGACGGa----------CCGCGUGCGGcGGUGca -5'
31121 5' -63 NC_006560.1 + 2185 0.74 0.177574
Target:  5'- -gGCcucggGCCcGGCGCGCGCgGCCGCGc -3'
miRNA:   3'- caCGa----CGGaCCGCGUGCGgCGGUGCa -5'
31121 5' -63 NC_006560.1 + 131390 0.74 0.181951
Target:  5'- gGUGCUGgCgGGCGCugGCCGCggaCGCGc -3'
miRNA:   3'- -CACGACgGaCCGCGugCGGCG---GUGCa -5'
31121 5' -63 NC_006560.1 + 95240 0.74 0.186422
Target:  5'- gGUGCUGCC-GGCGaccuuCGCCGCCGUGUc -3'
miRNA:   3'- -CACGACGGaCCGCgu---GCGGCGGUGCA- -5'
31121 5' -63 NC_006560.1 + 137620 0.74 0.190991
Target:  5'- gGUGC-GCC-GGCgGCACGCgGCCGCGg -3'
miRNA:   3'- -CACGaCGGaCCG-CGUGCGgCGGUGCa -5'
31121 5' -63 NC_006560.1 + 115822 0.73 0.205289
Target:  5'- -cGCUcgucGCCUGGCuCGCGCaCGCCGCGc -3'
miRNA:   3'- caCGA----CGGACCGcGUGCG-GCGGUGCa -5'
31121 5' -63 NC_006560.1 + 23329 0.73 0.205289
Target:  5'- -cGCgGCC-GGCGcCGCGCCGCCGCc- -3'
miRNA:   3'- caCGaCGGaCCGC-GUGCGGCGGUGca -5'
31121 5' -63 NC_006560.1 + 125520 0.75 0.15707
Target:  5'- -cGCgccgGCCgcGGUGCGCGCCGCCGCc- -3'
miRNA:   3'- caCGa---CGGa-CCGCGUGCGGCGGUGca -5'
31121 5' -63 NC_006560.1 + 90660 0.75 0.153234
Target:  5'- -cGCcuaCCUGGCGCGCGCCGCCGg-- -3'
miRNA:   3'- caCGac-GGACCGCGUGCGGCGGUgca -5'
31121 5' -63 NC_006560.1 + 113076 0.76 0.142233
Target:  5'- cUGCUGCacaacacgcaGGCGCGCGCCGCCgACGc -3'
miRNA:   3'- cACGACGga--------CCGCGUGCGGCGG-UGCa -5'
31121 5' -63 NC_006560.1 + 66564 0.82 0.056535
Target:  5'- -gGCgucguacGCCggGGCGCACGCCGCCACGa -3'
miRNA:   3'- caCGa------CGGa-CCGCGUGCGGCGGUGCa -5'
31121 5' -63 NC_006560.1 + 60935 0.82 0.056535
Target:  5'- cGUGC-GCC-GGCGC-CGCCGCCACGUg -3'
miRNA:   3'- -CACGaCGGaCCGCGuGCGGCGGUGCA- -5'
31121 5' -63 NC_006560.1 + 23201 0.77 0.122374
Target:  5'- -gGCUgggGCCUGGCcCACGCCGCCGCc- -3'
miRNA:   3'- caCGA---CGGACCGcGUGCGGCGGUGca -5'
31121 5' -63 NC_006560.1 + 150288 0.77 0.125495
Target:  5'- -cGCcggagGCCcGcGCGCGCGCCGCCGCGg -3'
miRNA:   3'- caCGa----CGGaC-CGCGUGCGGCGGUGCa -5'
31121 5' -63 NC_006560.1 + 1518 0.76 0.131959
Target:  5'- cGUGCaucggGCCccgGGCGCGCGCCcgGCCACGc -3'
miRNA:   3'- -CACGa----CGGa--CCGCGUGCGG--CGGUGCa -5'
31121 5' -63 NC_006560.1 + 22658 0.76 0.135306
Target:  5'- -cGCcGCCgGGCGCagcgaGCGCCGCCGCGc -3'
miRNA:   3'- caCGaCGGaCCGCG-----UGCGGCGGUGCa -5'
31121 5' -63 NC_006560.1 + 117938 0.76 0.13873
Target:  5'- -cGC-GCCUGGCGCGgcugUGCCGCCACu- -3'
miRNA:   3'- caCGaCGGACCGCGU----GCGGCGGUGca -5'
31121 5' -63 NC_006560.1 + 132323 0.76 0.13873
Target:  5'- -cGCgGCCggGGCGCACGCgGUCGCGg -3'
miRNA:   3'- caCGaCGGa-CCGCGUGCGgCGGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.