miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31133 3' -59.3 NC_006560.1 + 148398 0.69 0.56287
Target:  5'- gGGAGcGGGGAcgcggggcgcuccggGCGGGccGGcGAGGAGGAGa -3'
miRNA:   3'- gUCUC-CUCCU---------------CGUCC--UC-CUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 148127 0.78 0.192488
Target:  5'- gGGAGGAGGAgaaaccGCAGG-GGAGcGGGGGGg -3'
miRNA:   3'- gUCUCCUCCU------CGUCCuCCUC-CUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 147911 0.73 0.3533
Target:  5'- gCGGGGcGGGGGCGGGGGaGAGGGGGc- -3'
miRNA:   3'- -GUCUCcUCCUCGUCCUC-CUCCUCCuc -5'
31133 3' -59.3 NC_006560.1 + 147782 0.67 0.718833
Target:  5'- gCAGAGGGGGcAGCuguugcgcaugGGGAGccaggucuuGAGGcAGGGGa -3'
miRNA:   3'- -GUCUCCUCC-UCG-----------UCCUC---------CUCC-UCCUC- -5'
31133 3' -59.3 NC_006560.1 + 147374 0.76 0.233705
Target:  5'- gGGuGGGGGGuGCGGGGGGGgcGGAGGGGa -3'
miRNA:   3'- gUCuCCUCCU-CGUCCUCCU--CCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 147044 0.72 0.393386
Target:  5'- aCGGccGGGGGGcGGCGGGGGGAGGcGGGc -3'
miRNA:   3'- -GUC--UCCUCC-UCGUCCUCCUCCuCCUc -5'
31133 3' -59.3 NC_006560.1 + 146461 0.76 0.259397
Target:  5'- gCGGcGGAGGAGCGGGGGGcGGAgcggcggccgcgagcGGAGg -3'
miRNA:   3'- -GUCuCCUCCUCGUCCUCCuCCU---------------CCUC- -5'
31133 3' -59.3 NC_006560.1 + 146397 0.72 0.410227
Target:  5'- gCAGGGGGcGGAGCggcGGGcGGAGGcGGAGc -3'
miRNA:   3'- -GUCUCCU-CCUCG---UCCuCCUCCuCCUC- -5'
31133 3' -59.3 NC_006560.1 + 143697 0.76 0.237078
Target:  5'- gGGAGGGGGcgggacgaggcgagAGCGGGcgcgucggggagaGGGAGGGGGAGa -3'
miRNA:   3'- gUCUCCUCC--------------UCGUCC-------------UCCUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 142673 0.69 0.588778
Target:  5'- -cGGGuGAGGGGCGGcGGcGGAccGGAGGGGg -3'
miRNA:   3'- guCUC-CUCCUCGUC-CU-CCU--CCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 141622 0.73 0.377001
Target:  5'- cCGGGGGAGGAa-GGGGGGGGGaAGGGa -3'
miRNA:   3'- -GUCUCCUCCUcgUCCUCCUCC-UCCUc -5'
31133 3' -59.3 NC_006560.1 + 140475 0.77 0.207142
Target:  5'- gCGGGccGGGGGGGC-GGAGGAGGuGGGGg -3'
miRNA:   3'- -GUCU--CCUCCUCGuCCUCCUCCuCCUC- -5'
31133 3' -59.3 NC_006560.1 + 140398 0.66 0.738225
Target:  5'- cCGGGGGGGGuucagcgccggGGaCGGGAGGGcucGGuGGAGu -3'
miRNA:   3'- -GUCUCCUCC-----------UC-GUCCUCCU---CCuCCUC- -5'
31133 3' -59.3 NC_006560.1 + 137168 0.66 0.766619
Target:  5'- gGGGcGGAGG-GCGcGGAGGGcgcGGAGGGc -3'
miRNA:   3'- gUCU-CCUCCuCGU-CCUCCU---CCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 128251 0.72 0.422278
Target:  5'- cCAGAGGuccuGCAGGAGGcgcugcgcgccgaggGGGGGGAGg -3'
miRNA:   3'- -GUCUCCuccuCGUCCUCC---------------UCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 122277 0.67 0.718833
Target:  5'- --cAGGAGGAGCAGcucGAGGAGGc- -3'
miRNA:   3'- gucUCCUCCUCGUCcucCUCCUCCuc -5'
31133 3' -59.3 NC_006560.1 + 120765 0.78 0.187808
Target:  5'- uGGGGGuGGGGCgAGGGGaGGGGAGGGGc -3'
miRNA:   3'- gUCUCCuCCUCG-UCCUC-CUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 117294 0.7 0.491183
Target:  5'- gGGAGGGGGGGCAGacaGAGaAGGGcgcGGAGg -3'
miRNA:   3'- gUCUCCUCCUCGUC---CUCcUCCU---CCUC- -5'
31133 3' -59.3 NC_006560.1 + 102633 0.69 0.577785
Target:  5'- cCGGGGGAGGuuaaacGCGGGGGccgcccagaagucGGGGGGGAa -3'
miRNA:   3'- -GUCUCCUCCu-----CGUCCUC-------------CUCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 100845 0.74 0.316189
Target:  5'- gAGGGGAGGGGCGgugucgggacGGAGcgcgacGAGGGGGGGa -3'
miRNA:   3'- gUCUCCUCCUCGU----------CCUC------CUCCUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.