miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31133 5' -70.1 NC_006560.1 + 68256 0.66 0.369837
Target:  5'- gGGCGCacgggcucccggagaCCGcGCUCCUCGCGgagaaCCUcCCGGg -3'
miRNA:   3'- -CCGCGg--------------GGC-CGGGGGGCGC-----GGA-GGCC- -5'
31133 5' -70.1 NC_006560.1 + 86643 0.66 0.369109
Target:  5'- cGCGgCCCGGCUCcaggCCCGCcacgGCgUCCGc -3'
miRNA:   3'- cCGCgGGGCCGGG----GGGCG----CGgAGGCc -5'
31133 5' -70.1 NC_006560.1 + 20022 0.66 0.369109
Target:  5'- uGGUGCCCCuccgaGGCCCgcgucgCCCGUcguuccgaGCCaUCGGg -3'
miRNA:   3'- -CCGCGGGG-----CCGGG------GGGCG--------CGGaGGCC- -5'
31133 5' -70.1 NC_006560.1 + 15364 0.66 0.369109
Target:  5'- cGGUGaggCCGGgacuCCCCCC-CGCCUCCu- -3'
miRNA:   3'- -CCGCgg-GGCC----GGGGGGcGCGGAGGcc -5'
31133 5' -70.1 NC_006560.1 + 10718 0.66 0.369109
Target:  5'- cGGCGCUCgCGuGCUUCCaCGuCGUCUCCa- -3'
miRNA:   3'- -CCGCGGG-GC-CGGGGG-GC-GCGGAGGcc -5'
31133 5' -70.1 NC_006560.1 + 123288 0.66 0.369109
Target:  5'- cGCGCagCC-GCCgCCCCGgGgUUCCGGg -3'
miRNA:   3'- cCGCGg-GGcCGG-GGGGCgCgGAGGCC- -5'
31133 5' -70.1 NC_006560.1 + 80172 0.66 0.369109
Target:  5'- aGGUcCCCCGGCgggucucguCCCCCGCacCCUCgCGc -3'
miRNA:   3'- -CCGcGGGGCCG---------GGGGGCGc-GGAG-GCc -5'
31133 5' -70.1 NC_006560.1 + 47267 0.66 0.369109
Target:  5'- cGGCGCCgCGGaCCCgaaagaGCGCCUgCGcGg -3'
miRNA:   3'- -CCGCGGgGCCgGGGgg----CGCGGAgGC-C- -5'
31133 5' -70.1 NC_006560.1 + 124491 0.66 0.369109
Target:  5'- cGGcCGCCgCCGaCCCCCgGCcCCUCaUGGc -3'
miRNA:   3'- -CC-GCGG-GGCcGGGGGgCGcGGAG-GCC- -5'
31133 5' -70.1 NC_006560.1 + 96943 0.66 0.369109
Target:  5'- cGCGaCCUcucgaCGGgCCgCCGCGCCgccgcgCCGGu -3'
miRNA:   3'- cCGC-GGG-----GCCgGGgGGCGCGGa-----GGCC- -5'
31133 5' -70.1 NC_006560.1 + 25489 0.66 0.369109
Target:  5'- cGGCGCCgCC-GCCCgcgacccccgCCCGCGaCCcCCGc -3'
miRNA:   3'- -CCGCGG-GGcCGGG----------GGGCGC-GGaGGCc -5'
31133 5' -70.1 NC_006560.1 + 76706 0.66 0.368382
Target:  5'- gGGCGCCUggaagucgccggCGGCCCUggaggcggCgCGCGagcagcugugcgcCCUCCGGa -3'
miRNA:   3'- -CCGCGGG------------GCCGGGG--------G-GCGC-------------GGAGGCC- -5'
31133 5' -70.1 NC_006560.1 + 146140 0.66 0.366931
Target:  5'- cGCGCCCCacgaggaccacguaGGCCCCgaUgGCGCCcgucUCCa- -3'
miRNA:   3'- cCGCGGGG--------------CCGGGG--GgCGCGG----AGGcc -5'
31133 5' -70.1 NC_006560.1 + 50084 0.66 0.361882
Target:  5'- -aCGCCgCCGGCCCCgCCG-GCggCaCGGg -3'
miRNA:   3'- ccGCGG-GGCCGGGG-GGCgCGgaG-GCC- -5'
31133 5' -70.1 NC_006560.1 + 50429 0.66 0.361882
Target:  5'- aGUGCCCCcgggcccGCCCCCCG-GCCaagaucgagaUCCuGGa -3'
miRNA:   3'- cCGCGGGGc------CGGGGGGCgCGG----------AGG-CC- -5'
31133 5' -70.1 NC_006560.1 + 90435 0.66 0.361882
Target:  5'- cGGCGCCCCgggcaaGGCCCCCaaggggggGCGggaCggCGGg -3'
miRNA:   3'- -CCGCGGGG------CCGGGGGg-------CGCg--GagGCC- -5'
31133 5' -70.1 NC_006560.1 + 69468 0.66 0.361882
Target:  5'- gGGCGUCCUGaggcagacGCUCgCCCGCGUCaugggcCCGGu -3'
miRNA:   3'- -CCGCGGGGC--------CGGG-GGGCGCGGa-----GGCC- -5'
31133 5' -70.1 NC_006560.1 + 143103 0.66 0.361882
Target:  5'- cGGCcaccCCCCGGagcccCCCCCCGCcgGUCUCUc- -3'
miRNA:   3'- -CCGc---GGGGCC-----GGGGGGCG--CGGAGGcc -5'
31133 5' -70.1 NC_006560.1 + 134241 0.66 0.361882
Target:  5'- cGCGgCCC-GCCCCCgCGgccCGCCcgaagCCGGg -3'
miRNA:   3'- cCGCgGGGcCGGGGG-GC---GCGGa----GGCC- -5'
31133 5' -70.1 NC_006560.1 + 26581 0.66 0.361882
Target:  5'- cGGCGgccggaagcgaaCCCgaGGCCCagaaaggaCCCGCGCCg-CGGg -3'
miRNA:   3'- -CCGC------------GGGg-CCGGG--------GGGCGCGGagGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.