miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31144 3' -61.4 NC_006560.1 + 88748 0.66 0.711861
Target:  5'- gUUUUCGCGCgGCC--GGGG-GGGCGg -3'
miRNA:   3'- gGAGGGCGCGgUGGaaCUCCaCCCGC- -5'
31144 3' -61.4 NC_006560.1 + 148763 0.66 0.711861
Target:  5'- --cCCCgacggGCGCCAUgUUgGAGG-GGGCGg -3'
miRNA:   3'- ggaGGG-----CGCGGUGgAA-CUCCaCCCGC- -5'
31144 3' -61.4 NC_006560.1 + 95054 0.66 0.711861
Target:  5'- gCCggCCCGCGagGCCggcccgGAGaGcUGGGCGg -3'
miRNA:   3'- -GGa-GGGCGCggUGGaa----CUC-C-ACCCGC- -5'
31144 3' -61.4 NC_006560.1 + 10472 0.66 0.702275
Target:  5'- ---gCCaCGCCGCCUcGGGGcccgGGGCGg -3'
miRNA:   3'- ggagGGcGCGGUGGAaCUCCa---CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 29456 0.66 0.702275
Target:  5'- uCCgcgUCCGCaGCCGCCgucgaggggGAGGgagGGGgGa -3'
miRNA:   3'- -GGa--GGGCG-CGGUGGaa-------CUCCa--CCCgC- -5'
31144 3' -61.4 NC_006560.1 + 77650 0.66 0.702275
Target:  5'- gUUCggGUGCCGCUgggacgagcUGGGGUGGGCGc -3'
miRNA:   3'- gGAGggCGCGGUGGa--------ACUCCACCCGC- -5'
31144 3' -61.4 NC_006560.1 + 120350 0.66 0.702275
Target:  5'- gCC-CCUGCGUCACCccgUGcauGUGGGCc -3'
miRNA:   3'- -GGaGGGCGCGGUGGa--ACuc-CACCCGc -5'
31144 3' -61.4 NC_006560.1 + 22739 0.66 0.701314
Target:  5'- gCCgcggCCCGUGCCccuggacGCCgacGAGGccucGGGCGc -3'
miRNA:   3'- -GGa---GGGCGCGG-------UGGaa-CUCCa---CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 45741 0.66 0.696497
Target:  5'- gCCgcgggCUCGCGCCcCCgccagggguuggcgUGGGG-GGGCGc -3'
miRNA:   3'- -GGa----GGGCGCGGuGGa-------------ACUCCaCCCGC- -5'
31144 3' -61.4 NC_006560.1 + 17471 0.66 0.692635
Target:  5'- aCCUCCgGgGugaguCCGCCggggGGGGUGGGg- -3'
miRNA:   3'- -GGAGGgCgC-----GGUGGaa--CUCCACCCgc -5'
31144 3' -61.4 NC_006560.1 + 39519 0.66 0.692635
Target:  5'- gCCUCUCGCGUCGCCgcc--GUcGGGCc -3'
miRNA:   3'- -GGAGGGCGCGGUGGaacucCA-CCCGc -5'
31144 3' -61.4 NC_006560.1 + 203 0.66 0.692635
Target:  5'- uCCgcgCgCGCGCCGCCgc-GGGaGGGCc -3'
miRNA:   3'- -GGa--GgGCGCGGUGGaacUCCaCCCGc -5'
31144 3' -61.4 NC_006560.1 + 150532 0.66 0.692635
Target:  5'- uCCgcgCgCGCGCCGCCgc-GGGaGGGCc -3'
miRNA:   3'- -GGa--GgGCGCGGUGGaacUCCaCCCGc -5'
31144 3' -61.4 NC_006560.1 + 114435 0.66 0.692635
Target:  5'- aCC-CCUGCGCCGCCacGGccaacccGUGGGCc -3'
miRNA:   3'- -GGaGGGCGCGGUGGaaCUc------CACCCGc -5'
31144 3' -61.4 NC_006560.1 + 147199 0.66 0.692635
Target:  5'- cCCUCCCcCGCCggagGCgCggGGGGccgGGGCGc -3'
miRNA:   3'- -GGAGGGcGCGG----UG-GaaCUCCa--CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 35632 0.66 0.682949
Target:  5'- cCCgCCCGCcCgGCCUcGGGGUGcGCGg -3'
miRNA:   3'- -GGaGGGCGcGgUGGAaCUCCACcCGC- -5'
31144 3' -61.4 NC_006560.1 + 11570 0.66 0.682949
Target:  5'- gUCUCCCcgaccucCGCCGCCUcGGGGgucgcgGGGUu -3'
miRNA:   3'- -GGAGGGc------GCGGUGGAaCUCCa-----CCCGc -5'
31144 3' -61.4 NC_006560.1 + 70698 0.66 0.682949
Target:  5'- gCCgCCCGCGCCGCCacGGGcccccGGCGc -3'
miRNA:   3'- -GGaGGGCGCGGUGGaaCUCcac--CCGC- -5'
31144 3' -61.4 NC_006560.1 + 85486 0.66 0.682949
Target:  5'- --gCCUGCGCCGCUUgggcucGGGGUcgccGGGCu -3'
miRNA:   3'- ggaGGGCGCGGUGGAa-----CUCCA----CCCGc -5'
31144 3' -61.4 NC_006560.1 + 81689 0.66 0.682949
Target:  5'- gCCgaCCCGCGCCuugAUCUcgucGAGGUccccgaGGGCGa -3'
miRNA:   3'- -GGa-GGGCGCGG---UGGAa---CUCCA------CCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.