miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31165 5' -59.3 NC_006560.1 + 61774 0.66 0.789237
Target:  5'- gUAGCAcgacgcGGUGGUGUGCacGGCcUCGUCGc -3'
miRNA:   3'- gGUCGU------CCACCGCGCG--CUGcAGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 107974 0.66 0.806564
Target:  5'- gCCGGggaGGGcGGCGcCGgGACGUCGgcCGg -3'
miRNA:   3'- -GGUCg--UCCaCCGC-GCgCUGCAGCa-GC- -5'
31165 5' -59.3 NC_006560.1 + 3109 0.66 0.806564
Target:  5'- gCCAGCgAGGccaGCGCGCG-CGg-GUCGa -3'
miRNA:   3'- -GGUCG-UCCac-CGCGCGCuGCagCAGC- -5'
31165 5' -59.3 NC_006560.1 + 34517 0.66 0.79797
Target:  5'- gCCGGCAcGG-GGCGCGCGGgGgcaGagGg -3'
miRNA:   3'- -GGUCGU-CCaCCGCGCGCUgCag-CagC- -5'
31165 5' -59.3 NC_006560.1 + 143691 0.66 0.790117
Target:  5'- -aGGCAGGggagGGgGCGgGACGaggcgagagcgggcgCGUCGg -3'
miRNA:   3'- ggUCGUCCa---CCgCGCgCUGCa--------------GCAGC- -5'
31165 5' -59.3 NC_006560.1 + 43425 0.66 0.789237
Target:  5'- gCCGGgGGcGUcGGCGCGCGGCa-CGUgCGg -3'
miRNA:   3'- -GGUCgUC-CA-CCGCGCGCUGcaGCA-GC- -5'
31165 5' -59.3 NC_006560.1 + 39445 0.66 0.804001
Target:  5'- aCCAGCGccacggcgcugcgcGGUcggcgccgccGGCGCgGCGAcggggccucgcCGUCGUCGu -3'
miRNA:   3'- -GGUCGU--------------CCA----------CCGCG-CGCU-----------GCAGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 137250 0.66 0.780373
Target:  5'- --cGCGGGcGGCGgGCGACGcCGa-- -3'
miRNA:   3'- gguCGUCCaCCGCgCGCUGCaGCagc -5'
31165 5' -59.3 NC_006560.1 + 16246 0.66 0.789237
Target:  5'- gCGGgGGGUGGCGUagcaaugcgagGCGGCG-CGcgCGg -3'
miRNA:   3'- gGUCgUCCACCGCG-----------CGCUGCaGCa-GC- -5'
31165 5' -59.3 NC_006560.1 + 55820 0.66 0.79797
Target:  5'- aCCAGCGGaaGGCG-GCGcCGUCGccCGg -3'
miRNA:   3'- -GGUCGUCcaCCGCgCGCuGCAGCa-GC- -5'
31165 5' -59.3 NC_006560.1 + 10372 0.66 0.780373
Target:  5'- -gAGUuGGgGGCGCGCGACacCGUCa -3'
miRNA:   3'- ggUCGuCCaCCGCGCGCUGcaGCAGc -5'
31165 5' -59.3 NC_006560.1 + 104774 0.66 0.806564
Target:  5'- cCgGGCGGG-GGCGCGgGGgGgagCgGUCGg -3'
miRNA:   3'- -GgUCGUCCaCCGCGCgCUgCa--G-CAGC- -5'
31165 5' -59.3 NC_006560.1 + 86354 0.66 0.806564
Target:  5'- gCCAGCAGcauGUcGCGCcCGAUgGUCGUCa -3'
miRNA:   3'- -GGUCGUC---CAcCGCGcGCUG-CAGCAGc -5'
31165 5' -59.3 NC_006560.1 + 91832 0.66 0.823304
Target:  5'- aCCGGCuucgagGGCGaCGUGGCGcgCGUCa -3'
miRNA:   3'- -GGUCGucca--CCGC-GCGCUGCa-GCAGc -5'
31165 5' -59.3 NC_006560.1 + 93998 0.66 0.79797
Target:  5'- -gGGCcGG-GGCGgGgGACGUCG-CGg -3'
miRNA:   3'- ggUCGuCCaCCGCgCgCUGCAGCaGC- -5'
31165 5' -59.3 NC_006560.1 + 115116 0.66 0.783934
Target:  5'- gCGGCAGcUGGCGCuggcCGACGuggcccacgagucguUCGUCGc -3'
miRNA:   3'- gGUCGUCcACCGCGc---GCUGC---------------AGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 10240 0.66 0.780373
Target:  5'- gCGGCGGG-GGCGCGgGuCG-CGgCGg -3'
miRNA:   3'- gGUCGUCCaCCGCGCgCuGCaGCaGC- -5'
31165 5' -59.3 NC_006560.1 + 53207 0.66 0.789237
Target:  5'- cCCAGUAccugcugaacgcGGcccUGGCGgGCuACGUCGUCu -3'
miRNA:   3'- -GGUCGU------------CC---ACCGCgCGcUGCAGCAGc -5'
31165 5' -59.3 NC_006560.1 + 147684 0.66 0.789237
Target:  5'- cUCGGCcucGGcGcGCGUGCGGgGUCGUUGa -3'
miRNA:   3'- -GGUCGu--CCaC-CGCGCGCUgCAGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 82632 0.66 0.806564
Target:  5'- gCGGCGGG-GGCguucgaccGCGCGuAUGUCGccuUCGa -3'
miRNA:   3'- gGUCGUCCaCCG--------CGCGC-UGCAGC---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.