miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31165 5' -59.3 NC_006560.1 + 1997 0.68 0.696015
Target:  5'- gCCAGCuccagGGCG-GCGGCGUCcUCGg -3'
miRNA:   3'- -GGUCGucca-CCGCgCGCUGCAGcAGC- -5'
31165 5' -59.3 NC_006560.1 + 2078 0.69 0.647024
Target:  5'- gCGGCGGGguccgGGgGCcCGGCGUCGgcgCGc -3'
miRNA:   3'- gGUCGUCCa----CCgCGcGCUGCAGCa--GC- -5'
31165 5' -59.3 NC_006560.1 + 2452 0.67 0.724877
Target:  5'- gCCGccGCGGcccaGGCGCgGCGGCGgcgCGUCGg -3'
miRNA:   3'- -GGU--CGUCca--CCGCG-CGCUGCa--GCAGC- -5'
31165 5' -59.3 NC_006560.1 + 2567 0.72 0.474094
Target:  5'- --cGCAGGUcGCGCGCGGCGggccagcggaCGUCGc -3'
miRNA:   3'- gguCGUCCAcCGCGCGCUGCa---------GCAGC- -5'
31165 5' -59.3 NC_006560.1 + 2626 0.77 0.255668
Target:  5'- -gGGCAGGUagacguggcGGCGCGCGACGacgggccCGUCGg -3'
miRNA:   3'- ggUCGUCCA---------CCGCGCGCUGCa------GCAGC- -5'
31165 5' -59.3 NC_006560.1 + 3109 0.66 0.806564
Target:  5'- gCCAGCgAGGccaGCGCGCG-CGg-GUCGa -3'
miRNA:   3'- -GGUCG-UCCac-CGCGCGCuGCagCAGC- -5'
31165 5' -59.3 NC_006560.1 + 3248 0.67 0.761364
Target:  5'- -gGGCGGGcccgggcGGCGCGCGGCGcCagccgccgcggggGUCGg -3'
miRNA:   3'- ggUCGUCCa------CCGCGCGCUGCaG-------------CAGC- -5'
31165 5' -59.3 NC_006560.1 + 3326 0.71 0.529903
Target:  5'- gCCGGgGGcGcgGGCGgGCGGCGUCGgcgUCGg -3'
miRNA:   3'- -GGUCgUC-Ca-CCGCgCGCUGCAGC---AGC- -5'
31165 5' -59.3 NC_006560.1 + 3475 0.69 0.656874
Target:  5'- gCCGcGCGGGcGGCGU-CGGCGUCGgcgUCGg -3'
miRNA:   3'- -GGU-CGUCCaCCGCGcGCUGCAGC---AGC- -5'
31165 5' -59.3 NC_006560.1 + 3543 0.69 0.627297
Target:  5'- -gAGCAGGUcGGCG-GCGGCGgCGcCGa -3'
miRNA:   3'- ggUCGUCCA-CCGCgCGCUGCaGCaGC- -5'
31165 5' -59.3 NC_006560.1 + 3595 0.71 0.529903
Target:  5'- gCCAGCAGc-GGCGCgGCGGCGcCGgCGa -3'
miRNA:   3'- -GGUCGUCcaCCGCG-CGCUGCaGCaGC- -5'
31165 5' -59.3 NC_006560.1 + 3802 0.66 0.806564
Target:  5'- gCCAGCccGGGcacGGCG-GCGAgGUCGcCGc -3'
miRNA:   3'- -GGUCG--UCCa--CCGCgCGCUgCAGCaGC- -5'
31165 5' -59.3 NC_006560.1 + 3886 0.7 0.587939
Target:  5'- gCGGCGGcGUcGGCgGCGuCGGCGgCGUCGg -3'
miRNA:   3'- gGUCGUC-CA-CCG-CGC-GCUGCaGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 4010 0.68 0.705696
Target:  5'- gCCGGCgAGGccgggGGCG-GCGGCGgCGUCc -3'
miRNA:   3'- -GGUCG-UCCa----CCGCgCGCUGCaGCAGc -5'
31165 5' -59.3 NC_006560.1 + 4083 0.74 0.388275
Target:  5'- gCCAGCAGG-GGCGCGUaGGCG-CGgCGc -3'
miRNA:   3'- -GGUCGUCCaCCGCGCG-CUGCaGCaGC- -5'
31165 5' -59.3 NC_006560.1 + 4396 0.71 0.52042
Target:  5'- -gGGCGuacUGGCGCGCGGCGUCGcccagcUCGg -3'
miRNA:   3'- ggUCGUcc-ACCGCGCGCUGCAGC------AGC- -5'
31165 5' -59.3 NC_006560.1 + 4691 0.67 0.762281
Target:  5'- cCCGGCcacGGcGGCGCGCGcGCGgcggCGcUCGc -3'
miRNA:   3'- -GGUCGu--CCaCCGCGCGC-UGCa---GC-AGC- -5'
31165 5' -59.3 NC_006560.1 + 4892 0.67 0.724877
Target:  5'- gCCGGCGGG-GGC-CGCGuCG-CGcUCGg -3'
miRNA:   3'- -GGUCGUCCaCCGcGCGCuGCaGC-AGC- -5'
31165 5' -59.3 NC_006560.1 + 5108 0.68 0.705696
Target:  5'- gUCGGCGGG-GGCGCG--GCGUCGa-- -3'
miRNA:   3'- -GGUCGUCCaCCGCGCgcUGCAGCagc -5'
31165 5' -59.3 NC_006560.1 + 5279 0.76 0.286545
Target:  5'- gCGGCgAGGUcGGCGU-CGGCGUCGUCGu -3'
miRNA:   3'- gGUCG-UCCA-CCGCGcGCUGCAGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.