miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31165 5' -59.3 NC_006560.1 + 147100 0.78 0.202134
Target:  5'- gUCGGCGGGgggcgGGCGCGCGACG-CGggccgCGg -3'
miRNA:   3'- -GGUCGUCCa----CCGCGCGCUGCaGCa----GC- -5'
31165 5' -59.3 NC_006560.1 + 66972 0.78 0.222277
Target:  5'- cCCAGCAgccagagcguGGUGGCcgucugGCGCGGCGUCG-CGa -3'
miRNA:   3'- -GGUCGU----------CCACCG------CGCGCUGCAGCaGC- -5'
31165 5' -59.3 NC_006560.1 + 2626 0.77 0.255668
Target:  5'- -gGGCAGGUagacguggcGGCGCGCGACGacgggccCGUCGg -3'
miRNA:   3'- ggUCGUCCA---------CCGCGCGCUGCa------GCAGC- -5'
31165 5' -59.3 NC_006560.1 + 133540 0.76 0.26768
Target:  5'- -gGGCGGGgagccggcGGCGCGCGGCGUggcggaCGUCGg -3'
miRNA:   3'- ggUCGUCCa-------CCGCGCGCUGCA------GCAGC- -5'
31165 5' -59.3 NC_006560.1 + 138101 0.76 0.273854
Target:  5'- aCAGCcuccacGGCGcCGCGACGUCGUCGg -3'
miRNA:   3'- gGUCGucca--CCGC-GCGCUGCAGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 5279 0.76 0.286545
Target:  5'- gCGGCgAGGUcGGCGU-CGGCGUCGUCGu -3'
miRNA:   3'- gGUCG-UCCA-CCGCGcGCUGCAGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 128794 0.76 0.299695
Target:  5'- gCCGGCgcuucaAGG-GGCGCuGCGACG-CGUCGg -3'
miRNA:   3'- -GGUCG------UCCaCCGCG-CGCUGCaGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 12709 0.75 0.326667
Target:  5'- gUCGGCGGGggugGGgGCggggcccuggaugGUGACGUCGUCGg -3'
miRNA:   3'- -GGUCGUCCa---CCgCG-------------CGCUGCAGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 26492 0.75 0.341919
Target:  5'- cCCGGCGGGgggcgGGCGCGCGAgGgggCGg-- -3'
miRNA:   3'- -GGUCGUCCa----CCGCGCGCUgCa--GCagc -5'
31165 5' -59.3 NC_006560.1 + 116642 0.74 0.349361
Target:  5'- gCGGCGca--GCGCGCGAUGUCGUCGg -3'
miRNA:   3'- gGUCGUccacCGCGCGCUGCAGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 130521 0.74 0.364588
Target:  5'- gCCGGCcGGUGGCgccGCGCGGCGcCG-CGc -3'
miRNA:   3'- -GGUCGuCCACCG---CGCGCUGCaGCaGC- -5'
31165 5' -59.3 NC_006560.1 + 92969 0.74 0.380268
Target:  5'- cCCAGaCGGGcGGCGCG-GACGUCGg-- -3'
miRNA:   3'- -GGUC-GUCCaCCGCGCgCUGCAGCagc -5'
31165 5' -59.3 NC_006560.1 + 139251 0.74 0.380268
Target:  5'- uCCGGCgcccggacccccGGG-GGCGCGCGGuCGUCGgcgCGg -3'
miRNA:   3'- -GGUCG------------UCCaCCGCGCGCU-GCAGCa--GC- -5'
31165 5' -59.3 NC_006560.1 + 4083 0.74 0.388275
Target:  5'- gCCAGCAGG-GGCGCGUaGGCG-CGgCGc -3'
miRNA:   3'- -GGUCGUCCaCCGCGCG-CUGCaGCaGC- -5'
31165 5' -59.3 NC_006560.1 + 34608 0.74 0.388275
Target:  5'- uCCGGgGGGUGGcCGCGCGGC-UCGggggCGc -3'
miRNA:   3'- -GGUCgUCCACC-GCGCGCUGcAGCa---GC- -5'
31165 5' -59.3 NC_006560.1 + 125033 0.74 0.388275
Target:  5'- aCCGGCGGcUGGUgGCGCGGCgGUCGcCGg -3'
miRNA:   3'- -GGUCGUCcACCG-CGCGCUG-CAGCaGC- -5'
31165 5' -59.3 NC_006560.1 + 127185 0.73 0.404618
Target:  5'- gCCGGC-GGcGGUaGCGCGcCGUCGUCGc -3'
miRNA:   3'- -GGUCGuCCaCCG-CGCGCuGCAGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 115461 0.73 0.404618
Target:  5'- gCGGCuGGUGGCGCGCGGCaucCG-CGc -3'
miRNA:   3'- gGUCGuCCACCGCGCGCUGca-GCaGC- -5'
31165 5' -59.3 NC_006560.1 + 147055 0.73 0.404618
Target:  5'- gCGGCGGGgggaGGCGgGCGGCGa-GUCGg -3'
miRNA:   3'- gGUCGUCCa---CCGCgCGCUGCagCAGC- -5'
31165 5' -59.3 NC_006560.1 + 43873 0.73 0.416313
Target:  5'- gCCAGCGGGgccccgcgacccagGGCcuccugcagcGCGgGACGUCGUCc -3'
miRNA:   3'- -GGUCGUCCa-------------CCG----------CGCgCUGCAGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.