miRNA display CGI


Results 1 - 20 of 178 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3118 5' -52 NC_001493.1 + 112530 0.66 0.971647
Target:  5'- aUCAGUACCGuucGCaCGcCGAGuccuGCCAGCgCCu -3'
miRNA:   3'- -AGUCGUGGU---CG-GU-GCUUu---UGGUUG-GG- -5'
3118 5' -52 NC_001493.1 + 20502 0.66 0.977056
Target:  5'- -gGGCAUgAGCCAUGugauAGGCC--CCCg -3'
miRNA:   3'- agUCGUGgUCGGUGCu---UUUGGuuGGG- -5'
3118 5' -52 NC_001493.1 + 114156 0.66 0.974455
Target:  5'- --cGCGCCAaUCGCGggGACguACCa -3'
miRNA:   3'- aguCGUGGUcGGUGCuuUUGguUGGg -5'
3118 5' -52 NC_001493.1 + 99981 0.66 0.974184
Target:  5'- gCAGCGauacuauCCaaGGCCAUGggGAuCCAGgCCa -3'
miRNA:   3'- aGUCGU-------GG--UCGGUGCuuUU-GGUUgGG- -5'
3118 5' -52 NC_001493.1 + 77609 0.66 0.981665
Target:  5'- gCA-CGCUGGCCACGuucacACC-ACCCa -3'
miRNA:   3'- aGUcGUGGUCGGUGCuuu--UGGuUGGG- -5'
3118 5' -52 NC_001493.1 + 115878 0.66 0.981665
Target:  5'- gUCAcCACCGGCCcgauaauccCGAGAAUgGACCg -3'
miRNA:   3'- -AGUcGUGGUCGGu--------GCUUUUGgUUGGg -5'
3118 5' -52 NC_001493.1 + 72173 0.66 0.974455
Target:  5'- uUCAGaCACgGGCC-CGA--GCaGGCCCa -3'
miRNA:   3'- -AGUC-GUGgUCGGuGCUuuUGgUUGGG- -5'
3118 5' -52 NC_001493.1 + 48103 0.66 0.974455
Target:  5'- gUCGGUACCgcguggagGGCCuCGGcgcacCCGACCCc -3'
miRNA:   3'- -AGUCGUGG--------UCGGuGCUuuu--GGUUGGG- -5'
3118 5' -52 NC_001493.1 + 52661 0.66 0.974455
Target:  5'- aUCAGUuucuuuGCCAGCUugacaaacGCGGguuGAGCCAugcggucgauGCCCa -3'
miRNA:   3'- -AGUCG------UGGUCGG--------UGCU---UUUGGU----------UGGG- -5'
3118 5' -52 NC_001493.1 + 20437 0.66 0.979456
Target:  5'- uUCAuGCGCCGGUCGCGAc-ACgGugUCu -3'
miRNA:   3'- -AGU-CGUGGUCGGUGCUuuUGgUugGG- -5'
3118 5' -52 NC_001493.1 + 3699 0.66 0.981665
Target:  5'- cUCGGCaucuucucgACCGGUCGUGGAGAUgGACUCg -3'
miRNA:   3'- -AGUCG---------UGGUCGGUGCUUUUGgUUGGG- -5'
3118 5' -52 NC_001493.1 + 93123 0.66 0.977056
Target:  5'- aUCGuGCuauCCcgcGGCCACGGGAGCUuucGCCUa -3'
miRNA:   3'- -AGU-CGu--GG---UCGGUGCUUUUGGu--UGGG- -5'
3118 5' -52 NC_001493.1 + 60192 0.66 0.971647
Target:  5'- aUCGaaGCCcGCCGCGAAcuAUCAACCUc -3'
miRNA:   3'- -AGUcgUGGuCGGUGCUUu-UGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 28865 0.66 0.979456
Target:  5'- gUCAGCGCUucaaCGCGAGccugcAACCggUCCu -3'
miRNA:   3'- -AGUCGUGGucg-GUGCUU-----UUGGuuGGG- -5'
3118 5' -52 NC_001493.1 + 44293 0.66 0.974455
Target:  5'- aUAGC-CguGCCACcaucuCCGGCCCg -3'
miRNA:   3'- aGUCGuGguCGGUGcuuuuGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 50136 0.66 0.977056
Target:  5'- uUCuGUAUCAGgUaucguuuauugACGAGGACCAGCCg -3'
miRNA:   3'- -AGuCGUGGUCgG-----------UGCUUUUGGUUGGg -5'
3118 5' -52 NC_001493.1 + 50014 0.66 0.971647
Target:  5'- aCAGCGCCuGUCucuCGugGACCAuCUCa -3'
miRNA:   3'- aGUCGUGGuCGGu--GCuuUUGGUuGGG- -5'
3118 5' -52 NC_001493.1 + 20898 0.66 0.977056
Target:  5'- -gGGgAUCcccgguGCCGCGGGAGCguACCCg -3'
miRNA:   3'- agUCgUGGu-----CGGUGCUUUUGguUGGG- -5'
3118 5' -52 NC_001493.1 + 324 0.66 0.981665
Target:  5'- gUCAcCACCGGCCcgauaauccCGAGAAUgGACCg -3'
miRNA:   3'- -AGUcGUGGUCGGu--------GCUUUUGgUUGGg -5'
3118 5' -52 NC_001493.1 + 50229 0.66 0.977056
Target:  5'- ---uUACCGGUCuGCGAAGggGCCAACUCg -3'
miRNA:   3'- agucGUGGUCGG-UGCUUU--UGGUUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.