miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3118 5' -52 NC_001493.1 + 324 0.66 0.981665
Target:  5'- gUCAcCACCGGCCcgauaauccCGAGAAUgGACCg -3'
miRNA:   3'- -AGUcGUGGUCGGu--------GCUUUUGgUUGGg -5'
3118 5' -52 NC_001493.1 + 1783 0.69 0.900857
Target:  5'- gUCAGCuuu-GCCACGucGAUCGACCUu -3'
miRNA:   3'- -AGUCGugguCGGUGCuuUUGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 3249 0.73 0.726856
Target:  5'- -gGGCACCGGCCGu---GACgAGCCCg -3'
miRNA:   3'- agUCGUGGUCGGUgcuuUUGgUUGGG- -5'
3118 5' -52 NC_001493.1 + 3605 0.71 0.83524
Target:  5'- cUCGGgaCGCCAGUCACGAaguuuugaugguuaaGAGCCu-CCCg -3'
miRNA:   3'- -AGUC--GUGGUCGGUGCU---------------UUUGGuuGGG- -5'
3118 5' -52 NC_001493.1 + 3699 0.66 0.981665
Target:  5'- cUCGGCaucuucucgACCGGUCGUGGAGAUgGACUCg -3'
miRNA:   3'- -AGUCG---------UGGUCGGUGCUUUUGgUUGGG- -5'
3118 5' -52 NC_001493.1 + 5758 0.68 0.942809
Target:  5'- cCAGCGgugugggagggguguCCAGCagGCGc--GCCAGCCCg -3'
miRNA:   3'- aGUCGU---------------GGUCGg-UGCuuuUGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 8160 0.7 0.864755
Target:  5'- aCGGCGCCuGUUcCGAGccuCCGACCCc -3'
miRNA:   3'- aGUCGUGGuCGGuGCUUuu-GGUUGGG- -5'
3118 5' -52 NC_001493.1 + 8441 0.66 0.979456
Target:  5'- -uGGCGCCGcGCCGgGGcu-CCcACCCa -3'
miRNA:   3'- agUCGUGGU-CGGUgCUuuuGGuUGGG- -5'
3118 5' -52 NC_001493.1 + 8918 0.67 0.9619
Target:  5'- -gAGCGCCaugucuauaacAGCCcCGggGG-CGACCCg -3'
miRNA:   3'- agUCGUGG-----------UCGGuGCuuUUgGUUGGG- -5'
3118 5' -52 NC_001493.1 + 10699 0.71 0.831795
Target:  5'- cCGGaucgcgaACCGGCCGCGGucACCGAUCg -3'
miRNA:   3'- aGUCg------UGGUCGGUGCUuuUGGUUGGg -5'
3118 5' -52 NC_001493.1 + 10930 0.66 0.977056
Target:  5'- aCAGCugUGGCCGauc--GCCGauGCCCa -3'
miRNA:   3'- aGUCGugGUCGGUgcuuuUGGU--UGGG- -5'
3118 5' -52 NC_001493.1 + 11030 0.71 0.814111
Target:  5'- uUCA-CGCCAGCCGucauccCGAGGGCUcgacGACCCg -3'
miRNA:   3'- -AGUcGUGGUCGGU------GCUUUUGG----UUGGG- -5'
3118 5' -52 NC_001493.1 + 11376 0.68 0.930741
Target:  5'- cCAGCACCAuGCgccgccucagCACGggGauuugacgGCCGugGCCCa -3'
miRNA:   3'- aGUCGUGGU-CG----------GUGCuuU--------UGGU--UGGG- -5'
3118 5' -52 NC_001493.1 + 13107 0.67 0.965376
Target:  5'- cUCGGCGgCGGCCagcgcccgcGCGAAuACCucAUCCu -3'
miRNA:   3'- -AGUCGUgGUCGG---------UGCUUuUGGu-UGGG- -5'
3118 5' -52 NC_001493.1 + 13228 0.69 0.925277
Target:  5'- gUCcGUGCCGuGCCACGAucACCcagagggcGACCCc -3'
miRNA:   3'- -AGuCGUGGU-CGGUGCUuuUGG--------UUGGG- -5'
3118 5' -52 NC_001493.1 + 13417 0.69 0.919555
Target:  5'- uUCuGUGCCcGCaCGCGAAGAUC-ACCCu -3'
miRNA:   3'- -AGuCGUGGuCG-GUGCUUUUGGuUGGG- -5'
3118 5' -52 NC_001493.1 + 14540 0.7 0.887137
Target:  5'- gCAGCGCCGGCgGaCGAcGGACCGuauACgCCg -3'
miRNA:   3'- aGUCGUGGUCGgU-GCU-UUUGGU---UG-GG- -5'
3118 5' -52 NC_001493.1 + 14982 0.68 0.930741
Target:  5'- cCAGCACgAcCaCGCGggGcuccacguGCCAGCCCc -3'
miRNA:   3'- aGUCGUGgUcG-GUGCuuU--------UGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 16409 0.71 0.83524
Target:  5'- uUCAGCGCgaacaggcaucgcggUAGCCACaccuGGAAuccCCGACCCa -3'
miRNA:   3'- -AGUCGUG---------------GUCGGUG----CUUUu--GGUUGGG- -5'
3118 5' -52 NC_001493.1 + 17800 0.67 0.954238
Target:  5'- aUCGGCACggaGGCCuACGc--GCC-ACCCg -3'
miRNA:   3'- -AGUCGUGg--UCGG-UGCuuuUGGuUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.