miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3118 5' -52 NC_001493.1 + 123715 0.7 0.864755
Target:  5'- aCGGCGCCuGUUcCGAGccuCCGACCCc -3'
miRNA:   3'- aGUCGUGGuCGGuGCUUuu-GGUUGGG- -5'
3118 5' -52 NC_001493.1 + 102293 0.71 0.823046
Target:  5'- -gAGgACCGGCCgucGCGAccccCCGACCCg -3'
miRNA:   3'- agUCgUGGUCGG---UGCUuuu-GGUUGGG- -5'
3118 5' -52 NC_001493.1 + 18631 0.71 0.823046
Target:  5'- -gAGUACgaCGGCCGCGucGAgCGACCCg -3'
miRNA:   3'- agUCGUG--GUCGGUGCuuUUgGUUGGG- -5'
3118 5' -52 NC_001493.1 + 10699 0.71 0.831795
Target:  5'- cCGGaucgcgaACCGGCCGCGGucACCGAUCg -3'
miRNA:   3'- aGUCg------UGGUCGGUGCUuuUGGUUGGg -5'
3118 5' -52 NC_001493.1 + 126253 0.71 0.831795
Target:  5'- cCGGaucgcgaACCGGCCGCGGucACCGAUCg -3'
miRNA:   3'- aGUCg------UGGUCGGUGCUuuUGGUUGGg -5'
3118 5' -52 NC_001493.1 + 63982 0.71 0.851978
Target:  5'- -uGGUgauAUCGGUCACGAcucgugcggucguauGGACCGACCCa -3'
miRNA:   3'- agUCG---UGGUCGGUGCU---------------UUUGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 32849 0.7 0.86003
Target:  5'- gUCAGCACCGGgCACGAucucGAuuauuucuguuggaaACUAgugGCCCu -3'
miRNA:   3'- -AGUCGUGGUCgGUGCU----UU---------------UGGU---UGGG- -5'
3118 5' -52 NC_001493.1 + 45040 0.7 0.864755
Target:  5'- gCAGCACCcggcGGUCAUGggGACgCGagauauuugcGCCCu -3'
miRNA:   3'- aGUCGUGG----UCGGUGCuuUUG-GU----------UGGG- -5'
3118 5' -52 NC_001493.1 + 8160 0.7 0.864755
Target:  5'- aCGGCGCCuGUUcCGAGccuCCGACCCc -3'
miRNA:   3'- aGUCGUGGuCGGuGCUUuu-GGUUGGG- -5'
3118 5' -52 NC_001493.1 + 53083 0.71 0.822161
Target:  5'- -aGGUgaagACUgguGGCCACGAGAGCCAaaaagucACCCa -3'
miRNA:   3'- agUCG----UGG---UCGGUGCUUUUGGU-------UGGG- -5'
3118 5' -52 NC_001493.1 + 126585 0.71 0.814111
Target:  5'- uUCA-CGCCAGCCGucauccCGAGGGCUcgacGACCCg -3'
miRNA:   3'- -AGUcGUGGUCGGU------GCUUUUGG----UUGGG- -5'
3118 5' -52 NC_001493.1 + 30904 0.71 0.814111
Target:  5'- cCAuGcCACCGGUCACGGcguGGACCGuCCCg -3'
miRNA:   3'- aGU-C-GUGGUCGGUGCU---UUUGGUuGGG- -5'
3118 5' -52 NC_001493.1 + 34230 0.8 0.393932
Target:  5'- gCGGUGCCGGCCGCGuuGAUCugacGCCCg -3'
miRNA:   3'- aGUCGUGGUCGGUGCuuUUGGu---UGGG- -5'
3118 5' -52 NC_001493.1 + 111853 0.78 0.47757
Target:  5'- cCAGCucGCCcacGGCCugGAGGACCGAUCUa -3'
miRNA:   3'- aGUCG--UGG---UCGGugCUUUUGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 64456 0.78 0.487407
Target:  5'- gUCAGCACaaCAGCCACauGAuAACCAugACCCc -3'
miRNA:   3'- -AGUCGUG--GUCGGUG--CUuUUGGU--UGGG- -5'
3118 5' -52 NC_001493.1 + 79496 0.76 0.590089
Target:  5'- gUAGCACCAGCgucacauagGCGAAGACgAGCCUg -3'
miRNA:   3'- aGUCGUGGUCGg--------UGCUUUUGgUUGGG- -5'
3118 5' -52 NC_001493.1 + 54893 0.74 0.66321
Target:  5'- gUCAGCGCCccgccGCCAccaucacaguucuCGGAugagccGACCAGCCCg -3'
miRNA:   3'- -AGUCGUGGu----CGGU-------------GCUU------UUGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 113270 0.73 0.747124
Target:  5'- gCGGuCGcCCAGCCACGGAcccGgCAACCCc -3'
miRNA:   3'- aGUC-GU-GGUCGGUGCUUu--UgGUUGGG- -5'
3118 5' -52 NC_001493.1 + 78901 0.72 0.786276
Target:  5'- gUCAGCauucgggguauGCCGGCCuCGGucAGACC-GCCCg -3'
miRNA:   3'- -AGUCG-----------UGGUCGGuGCU--UUUGGuUGGG- -5'
3118 5' -52 NC_001493.1 + 11030 0.71 0.814111
Target:  5'- uUCA-CGCCAGCCGucauccCGAGGGCUcgacGACCCg -3'
miRNA:   3'- -AGUcGUGGUCGGU------GCUUUUGG----UUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.