Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31186 | 3' | -61.6 | NC_006560.1 | + | 26132 | 0.66 | 0.634069 |
Target: 5'- --gGCCCCGCCGggGCuGCGUggGGGc -3' miRNA: 3'- uagUGGGGCGGCagCGuCGCGagCUC- -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 147201 | 0.66 | 0.653882 |
Target: 5'- cUC-CCCCGCCGgaggCGCggGGgGC-CGGGg -3' miRNA: 3'- uAGuGGGGCGGCa---GCG--UCgCGaGCUC- -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 52241 | 0.66 | 0.624157 |
Target: 5'- cUgGCCCCgGCCGgCGCGGCGCa---- -3' miRNA: 3'- uAgUGGGG-CGGCaGCGUCGCGagcuc -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 665 | 0.66 | 0.634069 |
Target: 5'- -gCACCCCGgCGcgccCGCGGCGCgggcucgucgCGGGc -3' miRNA: 3'- uaGUGGGGCgGCa---GCGUCGCGa---------GCUC- -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 107447 | 0.66 | 0.647942 |
Target: 5'- -aCACCCUGCCccUCGCgaccgucggcccgggGGCGCUCGc- -3' miRNA: 3'- uaGUGGGGCGGc-AGCG---------------UCGCGAGCuc -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 120022 | 0.66 | 0.634069 |
Target: 5'- --gACCCCGgCGcCG-AGCGcCUCGAGa -3' miRNA: 3'- uagUGGGGCgGCaGCgUCGC-GAGCUC- -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 184 | 0.66 | 0.640016 |
Target: 5'- --gGCCCCGCCGgcguuuuuuuccgCGCGcGCGCcgccgCGGGa -3' miRNA: 3'- uagUGGGGCGGCa------------GCGU-CGCGa----GCUC- -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 150513 | 0.66 | 0.640016 |
Target: 5'- --gGCCCCGCCGgcguuuuuuuccgCGCGcGCGCcgccgCGGGa -3' miRNA: 3'- uagUGGGGCGGCa------------GCGU-CGCGa----GCUC- -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 131614 | 0.66 | 0.624157 |
Target: 5'- --gGCgCCGCCGgcccgGCGGCGgUCGAGc -3' miRNA: 3'- uagUGgGGCGGCag---CGUCGCgAGCUC- -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 22182 | 0.66 | 0.653882 |
Target: 5'- cUguCCCCGCCGUCGgGGcCGC-CGu- -3' miRNA: 3'- uAguGGGGCGGCAGCgUC-GCGaGCuc -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 103839 | 0.66 | 0.624157 |
Target: 5'- -cCACCaCCGCCGcCGCguuugcggcGGCGCUgGGc -3' miRNA: 3'- uaGUGG-GGCGGCaGCG---------UCGCGAgCUc -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 142703 | 0.66 | 0.64398 |
Target: 5'- -gCGCCCgGCCGgcCGCGGC-CcCGAGg -3' miRNA: 3'- uaGUGGGgCGGCa-GCGUCGcGaGCUC- -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 23612 | 0.66 | 0.653882 |
Target: 5'- ---gUCCCGCCG-CGCGGCGC-CGc- -3' miRNA: 3'- uaguGGGGCGGCaGCGUCGCGaGCuc -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 24687 | 0.66 | 0.634069 |
Target: 5'- -cCGCCUCGUCGUCGUGGacgccgugcCGCcCGAGg -3' miRNA: 3'- uaGUGGGGCGGCAGCGUC---------GCGaGCUC- -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 123906 | 0.66 | 0.634069 |
Target: 5'- -cCGCCgcaaCGCCGUCGCcccGCGCU-GAGc -3' miRNA: 3'- uaGUGGg---GCGGCAGCGu--CGCGAgCUC- -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 119305 | 0.66 | 0.632087 |
Target: 5'- -aCGCCCCGCCGcccaaugccgccCGCAGgGUcugCGAGc -3' miRNA: 3'- uaGUGGGGCGGCa-----------GCGUCgCGa--GCUC- -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 53473 | 0.66 | 0.663768 |
Target: 5'- -cCGCCCgagGCCG-CgGCGGCGCgCGAGg -3' miRNA: 3'- uaGUGGGg--CGGCaG-CGUCGCGaGCUC- -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 141748 | 0.66 | 0.642989 |
Target: 5'- --aGCCCCGCCcccgCGCccgcguuGGCGCgcggCGAGa -3' miRNA: 3'- uagUGGGGCGGca--GCG-------UCGCGa---GCUC- -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 26381 | 0.66 | 0.653882 |
Target: 5'- -gCGCCCCgGCCGgggCGCaggGGCGCgccccCGGGc -3' miRNA: 3'- uaGUGGGG-CGGCa--GCG---UCGCGa----GCUC- -5' |
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31186 | 3' | -61.6 | NC_006560.1 | + | 102579 | 0.66 | 0.64398 |
Target: 5'- --gGCCgCCGCCcggCGCcGCGcCUCGAGa -3' miRNA: 3'- uagUGG-GGCGGca-GCGuCGC-GAGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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